Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2758 and Shewana3_2759 are separated by 176 nucleotides Shewana3_2759 and Shewana3_2760 are separated by 129 nucleotides
Shewana3_2758: Shewana3_2758 - FAD linked oxidase domain-containing protein (RefSeq), at 3,292,178 to 3,294,868
_2758
Shewana3_2759: Shewana3_2759 - hypothetical protein (RefSeq), at 3,295,045 to 3,295,941
_2759
Shewana3_2760: Shewana3_2760 - ABC transporter related (RefSeq), at 3,296,071 to 3,297,711
_2760
Position (kb)
3295
3296 Strain fitness (log2 ratio)
-2
-1
0
1 at 3294.563 kb on + strand, within Shewana3_2758 at 3294.583 kb on + strand, within Shewana3_2758 at 3294.654 kb on - strand at 3294.756 kb on - strand at 3294.805 kb on + strand at 3294.838 kb on - strand at 3294.924 kb on - strand at 3295.030 kb on + strand at 3295.065 kb on + strand at 3295.402 kb on - strand, within Shewana3_2759 at 3295.485 kb on - strand, within Shewana3_2759 at 3295.553 kb on + strand, within Shewana3_2759 at 3295.589 kb on + strand, within Shewana3_2759 at 3295.789 kb on + strand, within Shewana3_2759 at 3295.858 kb on - strand at 3295.889 kb on + strand at 3295.892 kb on - strand at 3296.005 kb on - strand at 3296.005 kb on - strand at 3296.923 kb on + strand, within Shewana3_2760
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 3,294,563 + Shewana3_2758 0.89 -0.5 3,294,583 + Shewana3_2758 0.89 +0.4 3,294,654 - +1.2 3,294,756 - -1.3 3,294,805 + +0.4 3,294,838 - +0.2 3,294,924 - -0.8 3,295,030 + +0.7 3,295,065 + -0.1 3,295,402 - Shewana3_2759 0.40 +0.3 3,295,485 - Shewana3_2759 0.49 -1.1 3,295,553 + Shewana3_2759 0.57 -2.1 3,295,589 + Shewana3_2759 0.61 -1.4 3,295,789 + Shewana3_2759 0.83 +1.6 3,295,858 - -1.2 3,295,889 + -0.9 3,295,892 - +0.3 3,296,005 - +0.6 3,296,005 - +0.8 3,296,923 + Shewana3_2760 0.52 -0.5
Or see this region's nucleotide sequence