Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2240 and Shewana3_2241 are separated by 590 nucleotides Shewana3_2241 and Shewana3_2242 are separated by 416 nucleotides
Shewana3_2240: Shewana3_2240 - hypothetical protein (RefSeq), at 2,693,621 to 2,694,487
_2240
Shewana3_2241: Shewana3_2241 - hypothetical protein (RefSeq), at 2,695,078 to 2,695,512
_2241
Shewana3_2242: Shewana3_2242 - ATPase (RefSeq), at 2,695,929 to 2,696,870
_2242
Position (kb)
2695
2696 Strain fitness (log2 ratio)
-1
0
1 at 2694.096 kb on - strand, within Shewana3_2240 at 2694.179 kb on + strand, within Shewana3_2240 at 2694.188 kb on + strand, within Shewana3_2240 at 2694.456 kb on - strand at 2694.539 kb on + strand at 2694.539 kb on + strand at 2694.547 kb on - strand at 2694.616 kb on - strand at 2694.689 kb on + strand at 2694.689 kb on + strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.697 kb on - strand at 2694.805 kb on - strand at 2694.953 kb on - strand at 2694.970 kb on + strand at 2695.056 kb on + strand at 2695.336 kb on - strand, within Shewana3_2241 at 2695.385 kb on + strand, within Shewana3_2241 at 2695.394 kb on + strand, within Shewana3_2241 at 2695.500 kb on + strand at 2695.559 kb on + strand at 2696.094 kb on + strand, within Shewana3_2242 at 2696.124 kb on - strand, within Shewana3_2242 at 2696.124 kb on - strand, within Shewana3_2242 at 2696.296 kb on - strand, within Shewana3_2242
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 2,694,096 - Shewana3_2240 0.55 +0.2 2,694,179 + Shewana3_2240 0.64 +1.0 2,694,188 + Shewana3_2240 0.65 +1.1 2,694,456 - -1.1 2,694,539 + +0.6 2,694,539 + +0.2 2,694,547 - +1.1 2,694,616 - -1.4 2,694,689 + +1.2 2,694,689 + +0.2 2,694,697 - -0.0 2,694,697 - +0.2 2,694,697 - +1.4 2,694,697 - +0.3 2,694,805 - +0.4 2,694,953 - +1.2 2,694,970 + +0.5 2,695,056 + -0.1 2,695,336 - Shewana3_2241 0.59 +1.3 2,695,385 + Shewana3_2241 0.71 +0.1 2,695,394 + Shewana3_2241 0.73 +1.1 2,695,500 + +0.4 2,695,559 + +0.2 2,696,094 + Shewana3_2242 0.18 -0.9 2,696,124 - Shewana3_2242 0.21 +0.6 2,696,124 - Shewana3_2242 0.21 -1.5 2,696,296 - Shewana3_2242 0.39 -0.3
Or see this region's nucleotide sequence