Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0623 and Shewana3_0624 are separated by 77 nucleotides Shewana3_0624 and Shewana3_0625 are separated by 170 nucleotides
Shewana3_0623: Shewana3_0623 - penicillin-binding protein 1B (RefSeq), at 730,638 to 732,932
_0623
Shewana3_0624: Shewana3_0624 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 733,010 to 733,288
_0624
Shewana3_0625: Shewana3_0625 - hypothetical protein (RefSeq), at 733,459 to 733,896
_0625
Position (kb) 733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 732.428 kb on - strand, within Shewana3_0623 at 732.447 kb on + strand, within Shewana3_0623 at 732.573 kb on + strand, within Shewana3_0623 at 732.709 kb on + strand at 732.865 kb on - strand at 732.877 kb on - strand at 733.173 kb on - strand, within Shewana3_0624 at 733.176 kb on + strand, within Shewana3_0624 at 733.219 kb on + strand, within Shewana3_0624 at 733.304 kb on - strand at 733.438 kb on - strand at 733.503 kb on + strand, within Shewana3_0625 at 733.503 kb on + strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.511 kb on - strand, within Shewana3_0625 at 733.816 kb on + strand, within Shewana3_0625 at 733.824 kb on - strand, within Shewana3_0625 at 733.831 kb on - strand, within Shewana3_0625 at 733.915 kb on + strand at 733.961 kb on + strand at 733.980 kb on + strand at 734.129 kb on - strand at 734.270 kb on - strand at 734.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 732,428 - Shewana3_0623 0.78 -3.6 732,447 + Shewana3_0623 0.79 -2.0 732,573 + Shewana3_0623 0.84 -2.3 732,709 + -3.2 732,865 - -1.8 732,877 - -0.2 733,173 - Shewana3_0624 0.58 -2.7 733,176 + Shewana3_0624 0.59 -1.4 733,219 + Shewana3_0624 0.75 +0.4 733,304 - +0.7 733,438 - +0.6 733,503 + Shewana3_0625 0.10 -0.6 733,503 + Shewana3_0625 0.10 -0.9 733,511 - Shewana3_0625 0.12 +0.1 733,511 - Shewana3_0625 0.12 -0.6 733,511 - Shewana3_0625 0.12 -0.4 733,511 - Shewana3_0625 0.12 -0.0 733,511 - Shewana3_0625 0.12 -0.6 733,816 + Shewana3_0625 0.82 +0.9 733,824 - Shewana3_0625 0.83 -0.4 733,831 - Shewana3_0625 0.85 -1.0 733,915 + +0.6 733,961 + +0.1 733,980 + -1.4 734,129 - +0.6 734,270 - -0.8 734,270 - +0.5
Or see this region's nucleotide sequence