Strain Fitness in Shewanella loihica PV-4 around Shew_2506

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2504 and Shew_2505 are separated by 225 nucleotidesShew_2505 and Shew_2506 are separated by 259 nucleotidesShew_2506 and clpX are separated by 126 nucleotides Shew_2504: Shew_2504 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 2,944,391 to 2,946,256 _2504 Shew_2505: Shew_2505 - histone family protein DNA-binding protein (RefSeq), at 2,946,482 to 2,946,754 _2505 Shew_2506: Shew_2506 - ATP-dependent protease La (RefSeq), at 2,947,014 to 2,949,371 _2506 Shew_2507: clpX - ATP-dependent protease ATP-binding subunit (RefSeq), at 2,949,498 to 2,950,778 clpX Position (kb) 2947 2948 2949 2950Strain fitness (log2 ratio) -1 0 1 2at 2946.346 kb on - strandat 2946.346 kb on - strandat 2946.436 kb on - strandat 2946.747 kb on - strandat 2946.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,946,346 - +0.5
2,946,346 - -0.4
2,946,436 - +2.0
2,946,747 - +0.9
2,946,747 - -1.0

Or see this region's nucleotide sequence