Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0787 and Shew_0788 are separated by 114 nucleotides Shew_0788 and Shew_0789 are separated by 89 nucleotides Shew_0789 and Shew_0790 are separated by 16 nucleotides Shew_0790 and Shew_0791 are separated by 347 nucleotides
Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603
_0787
Shew_0788: Shew_0788 - dienelactone hydrolase (RefSeq), at 900,718 to 901,455
_0788
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Shew_0790: Shew_0790 - hypothetical protein (RefSeq), at 902,530 to 903,081
_0790
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1 at 900.552 kb on - strand at 900.948 kb on - strand, within Shew_0788 at 900.948 kb on - strand, within Shew_0788 at 901.183 kb on + strand, within Shew_0788 at 901.457 kb on - strand at 901.500 kb on - strand at 901.783 kb on + strand, within Shew_0789 at 901.783 kb on + strand, within Shew_0789 at 901.851 kb on - strand, within Shew_0789 at 901.970 kb on - strand, within Shew_0789 at 902.260 kb on + strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.491 kb on + strand at 902.579 kb on + strand at 902.719 kb on + strand, within Shew_0790 at 902.868 kb on - strand, within Shew_0790 at 902.967 kb on + strand, within Shew_0790 at 902.975 kb on - strand, within Shew_0790 at 903.226 kb on - strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.248 kb on + strand at 903.256 kb on - strand at 903.256 kb on - strand at 903.292 kb on + strand at 903.294 kb on + strand at 903.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 900,552 - +0.1 900,948 - Shew_0788 0.31 -0.7 900,948 - Shew_0788 0.31 +0.5 901,183 + Shew_0788 0.63 +0.1 901,457 - -2.1 901,500 - -2.2 901,783 + Shew_0789 0.25 -2.3 901,783 + Shew_0789 0.25 -0.9 901,851 - Shew_0789 0.32 -0.4 901,970 - Shew_0789 0.44 -0.4 902,260 + Shew_0789 0.74 -0.7 902,268 - Shew_0789 0.75 +1.0 902,268 - Shew_0789 0.75 -0.1 902,491 + -1.4 902,579 + +0.2 902,719 + Shew_0790 0.34 -0.3 902,868 - Shew_0790 0.61 -0.6 902,967 + Shew_0790 0.79 -0.4 902,975 - Shew_0790 0.81 -1.4 903,226 - +0.0 903,248 + -1.1 903,248 + -1.5 903,248 + +1.2 903,248 + -0.2 903,248 + -0.4 903,256 - +0.9 903,256 - -0.2 903,292 + -0.9 903,294 + -0.4 903,381 - -0.1
Or see this region's nucleotide sequence