Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0775 and Shew_0776 are separated by 99 nucleotides Shew_0776 and Shew_0777 are separated by 267 nucleotides Shew_0777 and Shew_0778 are separated by 577 nucleotides
Shew_0775: Shew_0775 - TetR family transcriptional regulator (RefSeq), at 886,542 to 887,099
_0775
Shew_0776: Shew_0776 - deaminase-reductase domain-containing protein (RefSeq), at 887,199 to 887,735
_0776
Shew_0777: Shew_0777 - two-component response regulator (RefSeq), at 888,003 to 888,722
_0777
Shew_0778: Shew_0778 - hypothetical protein (RefSeq), at 889,300 to 889,731
_0778
Position (kb) 888
889 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 887.184 kb on + strand at 887.190 kb on - strand at 887.281 kb on - strand, within Shew_0776 at 887.393 kb on + strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.401 kb on - strand, within Shew_0776 at 887.420 kb on + strand, within Shew_0776 at 887.426 kb on + strand, within Shew_0776 at 887.526 kb on + strand, within Shew_0776 at 887.526 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.536 kb on - strand, within Shew_0776 at 887.561 kb on - strand, within Shew_0776 at 887.688 kb on + strand at 887.696 kb on - strand at 887.906 kb on + strand at 888.199 kb on - strand, within Shew_0777 at 888.218 kb on - strand, within Shew_0777 at 888.526 kb on - strand, within Shew_0777 at 888.905 kb on + strand at 889.082 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.355 kb on - strand, within Shew_0778 at 889.480 kb on + strand, within Shew_0778 at 889.534 kb on + strand, within Shew_0778 at 889.539 kb on + strand, within Shew_0778 at 889.655 kb on + strand, within Shew_0778
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 887,184 + +0.0 887,190 - -0.1 887,281 - Shew_0776 0.15 -0.1 887,393 + Shew_0776 0.36 -0.5 887,401 - Shew_0776 0.38 -0.3 887,401 - Shew_0776 0.38 +0.2 887,401 - Shew_0776 0.38 +0.4 887,401 - Shew_0776 0.38 +0.4 887,401 - Shew_0776 0.38 +1.1 887,401 - Shew_0776 0.38 -0.8 887,420 + Shew_0776 0.41 -0.2 887,426 + Shew_0776 0.42 +0.3 887,526 + Shew_0776 0.61 +0.9 887,526 - Shew_0776 0.61 +0.3 887,536 - Shew_0776 0.63 +1.3 887,536 - Shew_0776 0.63 -0.1 887,536 - Shew_0776 0.63 +0.2 887,561 - Shew_0776 0.67 +1.2 887,688 + +0.7 887,696 - +1.2 887,906 + -5.1 888,199 - Shew_0777 0.27 +3.9 888,218 - Shew_0777 0.30 -0.3 888,526 - Shew_0777 0.73 +1.7 888,905 + +4.3 889,082 - +1.9 889,245 - -0.3 889,245 - -0.2 889,245 - -0.3 889,245 - +0.9 889,355 - Shew_0778 0.13 -1.3 889,480 + Shew_0778 0.42 +0.3 889,534 + Shew_0778 0.54 -0.7 889,539 + Shew_0778 0.55 +0.2 889,655 + Shew_0778 0.82 -0.8
Or see this region's nucleotide sequence