Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0579 and Shew_0580 are separated by 6 nucleotides Shew_0580 and Shew_0581 are separated by 140 nucleotides
Shew_0579: Shew_0579 - arginine N-succinyltransferase (RefSeq), at 656,549 to 657,568
_0579
Shew_0580: Shew_0580 - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 657,575 to 659,038
_0580
Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979
_0581
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 656.877 kb on + strand, within Shew_0579 at 656.885 kb on - strand, within Shew_0579 at 657.112 kb on - strand, within Shew_0579 at 657.233 kb on + strand, within Shew_0579 at 657.265 kb on + strand, within Shew_0579 at 657.424 kb on + strand, within Shew_0579 at 657.689 kb on - strand at 657.699 kb on - strand at 657.797 kb on - strand, within Shew_0580 at 658.165 kb on + strand, within Shew_0580 at 658.303 kb on + strand, within Shew_0580 at 658.524 kb on - strand, within Shew_0580 at 658.729 kb on + strand, within Shew_0580 at 659.327 kb on + strand, within Shew_0581 at 659.335 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.417 kb on - strand, within Shew_0581 at 659.448 kb on + strand, within Shew_0581 at 659.456 kb on - strand, within Shew_0581 at 659.497 kb on - strand, within Shew_0581 at 659.826 kb on + strand, within Shew_0581 at 659.894 kb on + strand, within Shew_0581
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 656,877 + Shew_0579 0.32 -0.6 656,885 - Shew_0579 0.33 -1.1 657,112 - Shew_0579 0.55 -2.1 657,233 + Shew_0579 0.67 -0.4 657,265 + Shew_0579 0.70 -4.4 657,424 + Shew_0579 0.86 -1.2 657,689 - -0.3 657,699 - +0.8 657,797 - Shew_0580 0.15 -5.0 658,165 + Shew_0580 0.40 -0.8 658,303 + Shew_0580 0.50 -1.8 658,524 - Shew_0580 0.65 +0.5 658,729 + Shew_0580 0.79 -0.5 659,327 + Shew_0581 0.18 -1.4 659,335 - Shew_0581 0.19 -0.7 659,417 - Shew_0581 0.30 +0.6 659,417 - Shew_0581 0.30 -0.5 659,448 + Shew_0581 0.34 +0.2 659,456 - Shew_0581 0.35 +0.4 659,497 - Shew_0581 0.40 +0.2 659,826 + Shew_0581 0.81 +2.4 659,894 + Shew_0581 0.89 +0.5
Or see this region's nucleotide sequence