Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0484 and Shew_0485 are separated by 36 nucleotides Shew_0485 and Shew_0486 are separated by 92 nucleotides Shew_0486 and Shew_0487 are separated by 27 nucleotides Shew_0487 and Shew_0488 are separated by 10 nucleotides Shew_0488 and Shew_0489 are separated by 277 nucleotides
Shew_0484: Shew_0484 - hypothetical protein (RefSeq), at 541,500 to 542,771
_0484
Shew_0485: Shew_0485 - cold-shock DNA-binding domain-containing protein (RefSeq), at 542,808 to 543,425
_0485
Shew_0486: Shew_0486 - permease (RefSeq), at 543,518 to 544,534
_0486
Shew_0487: Shew_0487 - redox-active disulfide protein 2 (RefSeq), at 544,562 to 544,810
_0487
Shew_0488: Shew_0488 - ArsR family transcriptional regulator (RefSeq), at 544,821 to 545,225
_0488
Shew_0489: Shew_0489 - hypothetical protein (RefSeq), at 545,503 to 545,931
_0489
Position (kb) 543
544
545 Strain fitness (log2 ratio) -1
0
1 at 542.637 kb on + strand, within Shew_0484 at 542.639 kb on - strand, within Shew_0484 at 542.669 kb on - strand at 542.851 kb on - strand at 543.095 kb on + strand, within Shew_0485 at 543.559 kb on + strand at 543.567 kb on - strand at 543.679 kb on - strand, within Shew_0486 at 543.679 kb on - strand, within Shew_0486 at 543.778 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.250 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.402 kb on + strand, within Shew_0486 at 544.412 kb on + strand, within Shew_0486 at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.542 kb on + strand at 544.550 kb on - strand at 544.550 kb on - strand at 544.550 kb on - strand at 544.631 kb on + strand, within Shew_0487 at 544.835 kb on + strand at 544.942 kb on - strand, within Shew_0488 at 545.058 kb on - strand, within Shew_0488 at 545.394 kb on + strand at 545.465 kb on + strand at 545.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 542,637 + Shew_0484 0.89 +0.5 542,639 - Shew_0484 0.90 +0.7 542,669 - +0.4 542,851 - +0.4 543,095 + Shew_0485 0.46 -0.0 543,559 + -1.3 543,567 - +0.8 543,679 - Shew_0486 0.16 +0.1 543,679 - Shew_0486 0.16 -0.9 543,778 + Shew_0486 0.26 -0.0 544,116 + Shew_0486 0.59 -0.4 544,116 + Shew_0486 0.59 +0.7 544,250 + Shew_0486 0.72 -0.8 544,321 + Shew_0486 0.79 +0.6 544,321 + Shew_0486 0.79 +1.7 544,402 + Shew_0486 0.87 +0.5 544,412 + Shew_0486 0.88 +1.6 544,542 + +0.5 544,542 + +0.3 544,542 + -0.3 544,542 + -1.1 544,542 + +0.4 544,550 - -0.5 544,550 - +0.2 544,550 - -0.9 544,631 + Shew_0487 0.28 +1.6 544,835 + -0.2 544,942 - Shew_0488 0.30 -0.0 545,058 - Shew_0488 0.59 -0.4 545,394 + +0.8 545,465 + -0.6 545,520 + +0.5
Or see this region's nucleotide sequence