Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0236 and Shew_0237 are separated by 10 nucleotides Shew_0237 and Shew_0238 are separated by 75 nucleotides
Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434
_0236
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Shew_0238: Shew_0238 - porin (RefSeq), at 254,419 to 255,507
_0238
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 251.742 kb on + strand, within Shew_0236 at 251.760 kb on - strand, within Shew_0236 at 252.100 kb on + strand, within Shew_0236 at 252.182 kb on + strand, within Shew_0236 at 252.243 kb on - strand, within Shew_0236 at 252.691 kb on + strand, within Shew_0237 at 252.702 kb on + strand, within Shew_0237 at 252.987 kb on + strand, within Shew_0237 at 253.048 kb on - strand, within Shew_0237 at 253.053 kb on - strand, within Shew_0237 at 253.224 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.396 kb on - strand, within Shew_0237 at 253.413 kb on - strand, within Shew_0237 at 253.444 kb on + strand, within Shew_0237 at 253.539 kb on + strand, within Shew_0237 at 253.588 kb on - strand, within Shew_0237 at 253.720 kb on - strand, within Shew_0237 at 253.901 kb on + strand, within Shew_0237 at 253.934 kb on + strand, within Shew_0237 at 254.074 kb on - strand, within Shew_0237 at 254.226 kb on + strand at 254.378 kb on + strand at 254.383 kb on + strand at 254.401 kb on - strand at 254.401 kb on - strand at 254.612 kb on + strand, within Shew_0238 at 254.661 kb on - strand, within Shew_0238 at 254.778 kb on - strand, within Shew_0238 at 254.782 kb on + strand, within Shew_0238 at 254.825 kb on - strand, within Shew_0238 at 254.859 kb on + strand, within Shew_0238 at 254.869 kb on + strand, within Shew_0238
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 251,742 + Shew_0236 0.25 -0.1 251,760 - Shew_0236 0.26 -0.5 252,100 + Shew_0236 0.64 +1.0 252,182 + Shew_0236 0.72 -0.4 252,243 - Shew_0236 0.79 -0.1 252,691 + Shew_0237 0.13 -0.4 252,702 + Shew_0237 0.14 -0.1 252,987 + Shew_0237 0.29 -0.6 253,048 - Shew_0237 0.32 +0.6 253,053 - Shew_0237 0.32 +0.2 253,224 - Shew_0237 0.41 -3.0 253,396 - Shew_0237 0.50 -0.1 253,396 - Shew_0237 0.50 -0.6 253,396 - Shew_0237 0.50 +0.3 253,413 - Shew_0237 0.51 -1.8 253,444 + Shew_0237 0.53 -1.6 253,539 + Shew_0237 0.58 +0.3 253,588 - Shew_0237 0.60 +0.5 253,720 - Shew_0237 0.67 +0.1 253,901 + Shew_0237 0.77 -2.6 253,934 + Shew_0237 0.78 -0.1 254,074 - Shew_0237 0.86 -0.5 254,226 + +0.3 254,378 + +1.1 254,383 + -1.2 254,401 - -0.2 254,401 - -0.2 254,612 + Shew_0238 0.18 +0.0 254,661 - Shew_0238 0.22 +1.1 254,778 - Shew_0238 0.33 +0.1 254,782 + Shew_0238 0.33 -0.1 254,825 - Shew_0238 0.37 -1.0 254,859 + Shew_0238 0.40 -2.4 254,869 + Shew_0238 0.41 +0.4
Or see this region's nucleotide sequence