Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_722 and Pf6N2E2_723 overlap by 7 nucleotides Pf6N2E2_723 and Pf6N2E2_724 are separated by 464 nucleotides Pf6N2E2_724 and Pf6N2E2_725 are separated by 229 nucleotides Pf6N2E2_725 and Pf6N2E2_726 overlap by 4 nucleotides
Pf6N2E2_722 - FIG139928: Putative protease, at 826,017 to 826,907
_722
Pf6N2E2_723 - FIG138517: Putative lipid carrier protein, at 826,901 to 827,371
_723
Pf6N2E2_724 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 827,836 to 828,513
_724
Pf6N2E2_725 - Nitrate/nitrite response regulator protein, at 828,743 to 829,390
_725
Pf6N2E2_726 - Nitrate/nitrite sensor protein (EC 2.7.3.-), at 829,387 to 831,186
_726
Position (kb) 827
828
829 Strain fitness (log2 ratio) -1
0
1 at 826.886 kb on - strand at 826.886 kb on - strand at 827.102 kb on + strand, within Pf6N2E2_723 at 827.103 kb on - strand, within Pf6N2E2_723 at 827.310 kb on + strand, within Pf6N2E2_723 at 827.311 kb on - strand, within Pf6N2E2_723 at 827.401 kb on + strand at 827.401 kb on + strand at 827.402 kb on - strand at 827.402 kb on - strand at 827.604 kb on + strand at 827.604 kb on + strand at 827.613 kb on + strand at 827.613 kb on + strand at 827.613 kb on + strand at 827.614 kb on - strand at 828.193 kb on + strand, within Pf6N2E2_724 at 828.248 kb on - strand, within Pf6N2E2_724 at 828.488 kb on - strand at 828.539 kb on + strand at 828.540 kb on - strand at 828.563 kb on - strand at 828.563 kb on - strand at 828.711 kb on + strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.712 kb on - strand at 828.731 kb on + strand at 828.732 kb on - strand at 828.732 kb on - strand at 829.035 kb on + strand, within Pf6N2E2_725 at 829.035 kb on + strand, within Pf6N2E2_725 at 829.036 kb on - strand, within Pf6N2E2_725 at 829.155 kb on + strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.156 kb on - strand, within Pf6N2E2_725 at 829.361 kb on + strand at 829.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 826,886 - -0.6 826,886 - -1.0 827,102 + Pf6N2E2_723 0.43 +0.1 827,103 - Pf6N2E2_723 0.43 +0.2 827,310 + Pf6N2E2_723 0.87 +0.7 827,311 - Pf6N2E2_723 0.87 -0.4 827,401 + +0.1 827,401 + +0.5 827,402 - +0.0 827,402 - -0.6 827,604 + +1.3 827,604 + -0.2 827,613 + +0.5 827,613 + +0.4 827,613 + -0.3 827,614 - -0.3 828,193 + Pf6N2E2_724 0.53 -0.2 828,248 - Pf6N2E2_724 0.61 -0.8 828,488 - +0.7 828,539 + +0.9 828,540 - +0.3 828,563 - -0.1 828,563 - +1.1 828,711 + -0.0 828,712 - +0.1 828,712 - +0.5 828,712 - -0.9 828,712 - +0.1 828,712 - -0.7 828,731 + -0.7 828,732 - +0.8 828,732 - -0.4 829,035 + Pf6N2E2_725 0.45 +0.3 829,035 + Pf6N2E2_725 0.45 +0.2 829,036 - Pf6N2E2_725 0.45 -0.0 829,155 + Pf6N2E2_725 0.64 +0.5 829,156 - Pf6N2E2_725 0.64 +1.0 829,156 - Pf6N2E2_725 0.64 +0.4 829,156 - Pf6N2E2_725 0.64 -0.4 829,156 - Pf6N2E2_725 0.64 -0.4 829,361 + +0.7 829,362 - +0.5
Or see this region's nucleotide sequence