Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_409 and Pf6N2E2_410 are separated by 219 nucleotides Pf6N2E2_410 and Pf6N2E2_411 are separated by 76 nucleotides Pf6N2E2_411 and Pf6N2E2_412 are separated by 183 nucleotides Pf6N2E2_412 and Pf6N2E2_413 are separated by 32 nucleotides
Pf6N2E2_409 - Permease of the drug/metabolite transporter (DMT) superfamily, at 478,975 to 479,898
_409
Pf6N2E2_410 - hypothetical protein, at 480,118 to 480,660
_410
Pf6N2E2_411 - Nitrogen regulation protein NR(I), at 480,737 to 480,892
_411
Pf6N2E2_412 - hypothetical protein, at 481,076 to 481,336
_412
Pf6N2E2_413 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 481,369 to 482,442
_413
Position (kb) 480
481 Strain fitness (log2 ratio) -1
0
1 at 479.752 kb on + strand, within Pf6N2E2_409 at 479.913 kb on + strand at 480.120 kb on - strand at 480.135 kb on - strand at 480.719 kb on - strand at 481.061 kb on - strand at 481.354 kb on + strand at 481.355 kb on - strand at 481.355 kb on - strand at 481.664 kb on + strand, within Pf6N2E2_413 at 481.664 kb on + strand, within Pf6N2E2_413
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 479,752 + Pf6N2E2_409 0.84 -0.9 479,913 + +0.0 480,120 - +1.3 480,135 - +1.0 480,719 - -0.8 481,061 - +0.7 481,354 + -0.9 481,355 - +0.1 481,355 - -0.4 481,664 + Pf6N2E2_413 0.27 +0.6 481,664 + Pf6N2E2_413 0.27 -0.3
Or see this region's nucleotide sequence