Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS03055

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS03050 and MMJJ_RS03055 are separated by 140 nucleotidesMMJJ_RS03055 and MMJJ_RS03060 are separated by 31 nucleotidesMMJJ_RS03060 and MMJJ_RS03065 are separated by 17 nucleotides MMJJ_RS03050: MMJJ_RS03050 - hypothetical protein, at 572,931 to 574,211 _RS03050 MMJJ_RS03055: MMJJ_RS03055 - hypothetical protein, at 574,352 to 574,804 _RS03055 MMJJ_RS03060: MMJJ_RS03060 - methanogenesis marker 7 protein, at 574,836 to 575,750 _RS03060 MMJJ_RS03065: MMJJ_RS03065 - CBS domain-containing protein, at 575,768 to 576,733 _RS03065 Position (kb) 574 575Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 573.419 kb on - strand, within MMJJ_RS03050at 573.448 kb on - strand, within MMJJ_RS03050at 573.516 kb on + strand, within MMJJ_RS03050at 573.527 kb on + strand, within MMJJ_RS03050at 573.539 kb on - strand, within MMJJ_RS03050at 573.539 kb on - strand, within MMJJ_RS03050at 573.539 kb on - strand, within MMJJ_RS03050at 573.539 kb on - strand, within MMJJ_RS03050at 573.540 kb on + strand, within MMJJ_RS03050at 573.540 kb on + strand, within MMJJ_RS03050at 573.540 kb on + strand, within MMJJ_RS03050at 573.547 kb on + strand, within MMJJ_RS03050at 573.609 kb on + strand, within MMJJ_RS03050at 573.650 kb on - strand, within MMJJ_RS03050at 573.651 kb on + strand, within MMJJ_RS03050at 573.651 kb on + strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.667 kb on - strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.668 kb on + strand, within MMJJ_RS03050at 573.669 kb on - strand, within MMJJ_RS03050at 573.669 kb on - strand, within MMJJ_RS03050at 573.669 kb on - strand, within MMJJ_RS03050at 573.670 kb on + strand, within MMJJ_RS03050at 573.670 kb on + strand, within MMJJ_RS03050at 573.682 kb on + strand, within MMJJ_RS03050at 573.682 kb on + strand, within MMJJ_RS03050at 573.683 kb on - strand, within MMJJ_RS03050at 573.687 kb on + strand, within MMJJ_RS03050at 573.710 kb on - strand, within MMJJ_RS03050at 573.710 kb on - strand, within MMJJ_RS03050at 573.711 kb on + strand, within MMJJ_RS03050at 573.718 kb on + strand, within MMJJ_RS03050at 573.719 kb on - strand, within MMJJ_RS03050at 573.720 kb on + strand, within MMJJ_RS03050at 573.720 kb on + strand, within MMJJ_RS03050at 573.746 kb on + strand, within MMJJ_RS03050at 573.784 kb on - strand, within MMJJ_RS03050at 573.785 kb on + strand, within MMJJ_RS03050at 573.819 kb on - strand, within MMJJ_RS03050at 573.820 kb on + strand, within MMJJ_RS03050at 573.820 kb on + strand, within MMJJ_RS03050at 573.857 kb on - strand, within MMJJ_RS03050at 573.857 kb on - strand, within MMJJ_RS03050at 573.857 kb on - strand, within MMJJ_RS03050at 573.857 kb on - strand, within MMJJ_RS03050at 573.858 kb on + strand, within MMJJ_RS03050at 573.858 kb on + strand, within MMJJ_RS03050at 573.864 kb on + strand, within MMJJ_RS03050at 573.882 kb on - strand, within MMJJ_RS03050at 573.882 kb on - strand, within MMJJ_RS03050at 573.882 kb on - strandat 573.935 kb on + strand, within MMJJ_RS03050at 573.946 kb on - strand, within MMJJ_RS03050at 573.957 kb on + strand, within MMJJ_RS03050at 573.964 kb on - strand, within MMJJ_RS03050at 573.964 kb on - strand, within MMJJ_RS03050at 574.015 kb on - strand, within MMJJ_RS03050at 574.015 kb on - strand, within MMJJ_RS03050at 574.015 kb on - strand, within MMJJ_RS03050at 574.023 kb on + strand, within MMJJ_RS03050at 574.063 kb on + strand, within MMJJ_RS03050at 574.063 kb on + strand, within MMJJ_RS03050at 574.094 kb on - strandat 574.098 kb on - strandat 574.117 kb on - strandat 574.118 kb on + strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.120 kb on - strandat 574.121 kb on + strandat 574.121 kb on + strandat 574.130 kb on - strandat 574.131 kb on + strandat 574.143 kb on + strandat 574.157 kb on - strandat 574.171 kb on - strandat 574.193 kb on - strandat 574.318 kb on - strandat 574.319 kb on + strandat 574.319 kb on + strandat 574.353 kb on - strandat 574.354 kb on + strandat 574.359 kb on - strandat 574.359 kb on - strandat 574.359 kb on - strandat 574.360 kb on + strandat 574.360 kb on + strandat 574.360 kb on + strandat 574.361 kb on - strandat 574.361 kb on - strandat 574.361 kb on - strandat 574.361 kb on - strandat 574.362 kb on + strandat 574.362 kb on + strandat 574.362 kb on + strandat 574.362 kb on + strandat 574.362 kb on + strandat 574.362 kb on + strandat 574.365 kb on - strandat 574.449 kb on + strand, within MMJJ_RS03055at 574.472 kb on - strand, within MMJJ_RS03055at 574.592 kb on - strand, within MMJJ_RS03055at 574.593 kb on + strand, within MMJJ_RS03055at 574.615 kb on - strandat 574.690 kb on - strandat 574.690 kb on - strand, within MMJJ_RS03055at 574.837 kb on - strandat 574.917 kb on + strandat 574.921 kb on - strandat 574.921 kb on - strandat 574.921 kb on - strandat 574.922 kb on + strandat 574.922 kb on + strandat 574.942 kb on - strand, within MMJJ_RS03060at 574.943 kb on + strand, within MMJJ_RS03060at 574.983 kb on + strand, within MMJJ_RS03060at 575.236 kb on - strand, within MMJJ_RS03060at 575.236 kb on - strandat 575.468 kb on + strand, within MMJJ_RS03060at 575.560 kb on + strand, within MMJJ_RS03060at 575.636 kb on + strand, within MMJJ_RS03060

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 FREE
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573,419 - MMJJ_RS03050 0.38 +0.1
573,448 - MMJJ_RS03050 0.40 +0.7
573,516 + MMJJ_RS03050 0.46 -0.4
573,527 + MMJJ_RS03050 0.47 -0.0
573,539 - MMJJ_RS03050 0.47 -0.4
573,539 - MMJJ_RS03050 0.47 -0.3
573,539 - MMJJ_RS03050 0.47 +0.0
573,539 - MMJJ_RS03050 0.47 -0.2
573,540 + MMJJ_RS03050 0.48 -0.1
573,540 + MMJJ_RS03050 0.48 +0.7
573,540 + MMJJ_RS03050 0.48 -0.3
573,547 + MMJJ_RS03050 0.48 +0.2
573,609 + MMJJ_RS03050 0.53 -0.3
573,650 - MMJJ_RS03050 0.56 -0.8
573,651 + MMJJ_RS03050 0.56 -1.5
573,651 + MMJJ_RS03050 0.56 -0.6
573,667 - MMJJ_RS03050 0.57 -0.2
573,667 - MMJJ_RS03050 0.57 +0.5
573,667 - MMJJ_RS03050 0.57 +0.2
573,667 - MMJJ_RS03050 0.57 -0.3
573,667 - MMJJ_RS03050 0.57 +0.4
573,667 - MMJJ_RS03050 0.57 +1.1
573,667 - MMJJ_RS03050 0.57 +0.1
573,668 + MMJJ_RS03050 0.58 +0.5
573,668 + MMJJ_RS03050 0.58 +0.2
573,668 + MMJJ_RS03050 0.58 +0.3
573,668 + MMJJ_RS03050 0.58 +0.7
573,668 + MMJJ_RS03050 0.58 +0.1
573,668 + MMJJ_RS03050 0.58 +1.6
573,668 + MMJJ_RS03050 0.58 -0.0
573,668 + MMJJ_RS03050 0.58 -0.5
573,668 + MMJJ_RS03050 0.58 +0.3
573,668 + MMJJ_RS03050 0.58 +0.2
573,668 + MMJJ_RS03050 0.58 -0.7
573,669 - MMJJ_RS03050 0.58 +0.6
573,669 - MMJJ_RS03050 0.58 -0.1
573,669 - MMJJ_RS03050 0.58 +0.3
573,670 + MMJJ_RS03050 0.58 -0.5
573,670 + MMJJ_RS03050 0.58 -0.2
573,682 + MMJJ_RS03050 0.59 -0.4
573,682 + MMJJ_RS03050 0.59 -1.2
573,683 - MMJJ_RS03050 0.59 +0.5
573,687 + MMJJ_RS03050 0.59 -0.0
573,710 - MMJJ_RS03050 0.61 +0.1
573,710 - MMJJ_RS03050 0.61 +0.6
573,711 + MMJJ_RS03050 0.61 -0.5
573,718 + MMJJ_RS03050 0.61 -0.3
573,719 - MMJJ_RS03050 0.62 -0.4
573,720 + MMJJ_RS03050 0.62 +0.3
573,720 + MMJJ_RS03050 0.62 -0.2
573,746 + MMJJ_RS03050 0.64 +0.1
573,784 - MMJJ_RS03050 0.67 -0.0
573,785 + MMJJ_RS03050 0.67 +0.2
573,819 - MMJJ_RS03050 0.69 +0.3
573,820 + MMJJ_RS03050 0.69 +0.6
573,820 + MMJJ_RS03050 0.69 -0.2
573,857 - MMJJ_RS03050 0.72 -0.6
573,857 - MMJJ_RS03050 0.72 -0.6
573,857 - MMJJ_RS03050 0.72 -0.2
573,857 - MMJJ_RS03050 0.72 +0.1
573,858 + MMJJ_RS03050 0.72 +0.6
573,858 + MMJJ_RS03050 0.72 -0.0
573,864 + MMJJ_RS03050 0.73 +0.3
573,882 - MMJJ_RS03050 0.74 -0.9
573,882 - MMJJ_RS03050 0.74 +1.4
573,882 - +0.9
573,935 + MMJJ_RS03050 0.78 -0.4
573,946 - MMJJ_RS03050 0.79 -0.3
573,957 + MMJJ_RS03050 0.80 +0.3
573,964 - MMJJ_RS03050 0.81 +0.3
573,964 - MMJJ_RS03050 0.81 +0.1
574,015 - MMJJ_RS03050 0.85 -0.2
574,015 - MMJJ_RS03050 0.85 -0.3
574,015 - MMJJ_RS03050 0.85 -0.5
574,023 + MMJJ_RS03050 0.85 +0.2
574,063 + MMJJ_RS03050 0.88 +0.2
574,063 + MMJJ_RS03050 0.88 -2.2
574,094 - -0.3
574,098 - +0.4
574,117 - +1.9
574,118 + +0.5
574,120 - -0.1
574,120 - -0.3
574,120 - -0.7
574,120 - +0.7
574,121 + +0.3
574,121 + +0.6
574,130 - -0.1
574,131 + -0.1
574,143 + +0.4
574,157 - +0.1
574,171 - -0.7
574,193 - -0.4
574,318 - +0.5
574,319 + +0.5
574,319 + +1.2
574,353 - +2.7
574,354 + +1.0
574,359 - +0.2
574,359 - -0.4
574,359 - -3.9
574,360 + -2.2
574,360 + -1.5
574,360 + -0.1
574,361 - -3.4
574,361 - +0.3
574,361 - -0.2
574,361 - +0.3
574,362 + +0.3
574,362 + +0.3
574,362 + -0.4
574,362 + -0.6
574,362 + -1.2
574,362 + -0.1
574,365 - -3.0
574,449 + MMJJ_RS03055 0.21 -1.1
574,472 - MMJJ_RS03055 0.26 -1.0
574,592 - MMJJ_RS03055 0.53 -1.0
574,593 + MMJJ_RS03055 0.53 -1.7
574,615 - -1.1
574,690 - +1.4
574,690 - MMJJ_RS03055 0.75 -2.6
574,837 - -1.1
574,917 + -2.1
574,921 - -2.1
574,921 - -0.1
574,921 - +0.4
574,922 + +0.5
574,922 + -0.4
574,942 - MMJJ_RS03060 0.12 -0.1
574,943 + MMJJ_RS03060 0.12 -1.8
574,983 + MMJJ_RS03060 0.16 -1.8
575,236 - MMJJ_RS03060 0.44 +0.9
575,236 - -1.5
575,468 + MMJJ_RS03060 0.69 -1.0
575,560 + MMJJ_RS03060 0.79 -1.1
575,636 + MMJJ_RS03060 0.87 -1.9

Or see this region's nucleotide sequence