Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02555 and CCNA_02556 are separated by 53 nucleotides CCNA_02556 and CCNA_02557 are separated by 120 nucleotides CCNA_02557 and CCNA_02558 are separated by 12 nucleotides
CCNA_02555: CCNA_02555 - adenosine 5'-monophosphoramidase, at 2,702,662 to 2,703,096
_02555
CCNA_02556: CCNA_02556 - hypothetical protein, at 2,703,150 to 2,703,731
_02556
CCNA_02557: CCNA_02557 - acyl-CoA thioesterase II, at 2,703,852 to 2,704,640
_02557
CCNA_02558: CCNA_02558 - enantioselective peptide amidase, at 2,704,653 to 2,706,239
_02558
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2702.861 kb on + strand, within CCNA_02555 at 2702.880 kb on - strand, within CCNA_02555 at 2702.958 kb on - strand, within CCNA_02555 at 2702.966 kb on - strand, within CCNA_02555 at 2702.966 kb on - strand, within CCNA_02555 at 2702.973 kb on + strand, within CCNA_02555 at 2702.986 kb on - strand, within CCNA_02555 at 2702.993 kb on - strand, within CCNA_02555 at 2702.995 kb on + strand, within CCNA_02555 at 2702.995 kb on + strand, within CCNA_02555 at 2702.995 kb on + strand, within CCNA_02555 at 2702.995 kb on + strand, within CCNA_02555 at 2702.996 kb on + strand, within CCNA_02555 at 2703.000 kb on + strand, within CCNA_02555 at 2703.003 kb on - strand, within CCNA_02555 at 2703.021 kb on + strand, within CCNA_02555 at 2703.021 kb on + strand, within CCNA_02555 at 2703.029 kb on - strand, within CCNA_02555 at 2703.053 kb on - strand at 2703.137 kb on - strand at 2703.137 kb on - strand at 2703.162 kb on + strand at 2703.162 kb on + strand at 2703.170 kb on - strand at 2703.204 kb on + strand at 2703.206 kb on - strand at 2703.208 kb on + strand at 2703.246 kb on - strand, within CCNA_02556 at 2703.287 kb on + strand, within CCNA_02556 at 2703.290 kb on - strand, within CCNA_02556 at 2703.301 kb on - strand, within CCNA_02556 at 2703.307 kb on + strand, within CCNA_02556 at 2703.315 kb on - strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.330 kb on + strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.338 kb on - strand, within CCNA_02556 at 2703.386 kb on + strand, within CCNA_02556 at 2703.402 kb on - strand, within CCNA_02556 at 2703.411 kb on + strand, within CCNA_02556 at 2703.423 kb on + strand, within CCNA_02556 at 2703.431 kb on + strand, within CCNA_02556 at 2703.449 kb on - strand, within CCNA_02556 at 2703.476 kb on + strand, within CCNA_02556 at 2703.497 kb on + strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.505 kb on - strand, within CCNA_02556 at 2703.519 kb on - strand, within CCNA_02556 at 2703.528 kb on + strand, within CCNA_02556 at 2703.551 kb on + strand, within CCNA_02556 at 2703.559 kb on - strand, within CCNA_02556 at 2703.559 kb on - strand, within CCNA_02556 at 2703.565 kb on + strand, within CCNA_02556 at 2703.578 kb on - strand, within CCNA_02556 at 2703.596 kb on + strand, within CCNA_02556 at 2703.598 kb on + strand, within CCNA_02556 at 2703.609 kb on - strand, within CCNA_02556 at 2703.644 kb on + strand, within CCNA_02556 at 2703.644 kb on + strand, within CCNA_02556 at 2703.650 kb on + strand, within CCNA_02556 at 2703.652 kb on - strand, within CCNA_02556 at 2703.665 kb on + strand, within CCNA_02556 at 2703.668 kb on - strand, within CCNA_02556 at 2703.690 kb on + strand at 2703.704 kb on + strand at 2703.704 kb on + strand at 2703.704 kb on + strand at 2703.704 kb on + strand at 2703.704 kb on + strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.712 kb on - strand at 2703.743 kb on + strand at 2703.744 kb on - strand at 2703.760 kb on + strand at 2703.764 kb on + strand at 2703.775 kb on + strand at 2703.804 kb on - strand at 2703.804 kb on - strand at 2703.806 kb on + strand at 2703.814 kb on - strand at 2703.857 kb on + strand at 2703.865 kb on - strand at 2703.865 kb on - strand at 2703.865 kb on - strand at 2703.865 kb on - strand at 2703.865 kb on - strand at 2703.915 kb on + strand at 2703.938 kb on - strand, within CCNA_02557 at 2703.969 kb on - strand, within CCNA_02557 at 2704.004 kb on + strand, within CCNA_02557 at 2704.006 kb on + strand, within CCNA_02557 at 2704.011 kb on + strand, within CCNA_02557 at 2704.011 kb on + strand, within CCNA_02557 at 2704.124 kb on - strand, within CCNA_02557 at 2704.142 kb on - strand, within CCNA_02557 at 2704.152 kb on + strand, within CCNA_02557 at 2704.152 kb on - strand, within CCNA_02557 at 2704.177 kb on + strand, within CCNA_02557 at 2704.183 kb on - strand, within CCNA_02557 at 2704.236 kb on + strand, within CCNA_02557 at 2704.266 kb on + strand, within CCNA_02557 at 2704.383 kb on + strand, within CCNA_02557 at 2704.445 kb on + strand, within CCNA_02557 at 2704.461 kb on + strand, within CCNA_02557 at 2704.461 kb on + strand, within CCNA_02557 at 2704.469 kb on - strand, within CCNA_02557 at 2704.483 kb on + strand, within CCNA_02557 at 2704.491 kb on - strand, within CCNA_02557 at 2704.491 kb on - strand, within CCNA_02557 at 2704.531 kb on + strand, within CCNA_02557 at 2704.577 kb on + strand at 2704.587 kb on + strand at 2704.643 kb on + strand at 2704.643 kb on + strand at 2704.647 kb on - strand at 2704.656 kb on - strand at 2704.817 kb on - strand, within CCNA_02558 at 2704.819 kb on + strand, within CCNA_02558 at 2704.852 kb on - strand, within CCNA_02558 at 2704.859 kb on + strand, within CCNA_02558 at 2704.864 kb on + strand, within CCNA_02558 at 2704.872 kb on - strand, within CCNA_02558 at 2704.872 kb on - strand, within CCNA_02558 at 2704.896 kb on - strand, within CCNA_02558 at 2704.903 kb on + strand, within CCNA_02558 at 2704.903 kb on - strand, within CCNA_02558 at 2704.922 kb on - strand, within CCNA_02558 at 2704.947 kb on - strand, within CCNA_02558 at 2704.949 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.959 kb on + strand, within CCNA_02558 at 2704.967 kb on - strand, within CCNA_02558 at 2704.967 kb on - strand, within CCNA_02558 at 2704.967 kb on - strand, within CCNA_02558 at 2704.981 kb on + strand, within CCNA_02558 at 2705.048 kb on + strand, within CCNA_02558 at 2705.077 kb on + strand, within CCNA_02558 at 2705.097 kb on + strand, within CCNA_02558 at 2705.101 kb on + strand, within CCNA_02558 at 2705.109 kb on - strand, within CCNA_02558 at 2705.111 kb on + strand, within CCNA_02558 at 2705.138 kb on - strand, within CCNA_02558 at 2705.154 kb on - strand, within CCNA_02558 at 2705.175 kb on - strand, within CCNA_02558 at 2705.190 kb on - strand, within CCNA_02558 at 2705.192 kb on + strand, within CCNA_02558 at 2705.200 kb on + strand, within CCNA_02558 at 2705.206 kb on - strand, within CCNA_02558 at 2705.211 kb on - strand, within CCNA_02558 at 2705.213 kb on - strand, within CCNA_02558 at 2705.239 kb on + strand, within CCNA_02558 at 2705.252 kb on - strand, within CCNA_02558 at 2705.338 kb on + strand, within CCNA_02558 at 2705.371 kb on + strand, within CCNA_02558 at 2705.375 kb on + strand, within CCNA_02558 at 2705.379 kb on - strand, within CCNA_02558 at 2705.379 kb on - strand, within CCNA_02558 at 2705.409 kb on + strand, within CCNA_02558 at 2705.419 kb on - strand, within CCNA_02558 at 2705.427 kb on + strand, within CCNA_02558 at 2705.427 kb on - strand, within CCNA_02558 at 2705.435 kb on - strand, within CCNA_02558 at 2705.447 kb on - strand, within CCNA_02558 at 2705.464 kb on + strand, within CCNA_02558 at 2705.464 kb on + strand, within CCNA_02558 at 2705.464 kb on + strand, within CCNA_02558 at 2705.515 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.531 kb on + strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.539 kb on - strand, within CCNA_02558 at 2705.541 kb on + strand, within CCNA_02558 at 2705.559 kb on - strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.573 kb on + strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.581 kb on - strand, within CCNA_02558 at 2705.591 kb on - strand, within CCNA_02558 at 2705.607 kb on + strand, within CCNA_02558 at 2705.620 kb on + strand, within CCNA_02558 at 2705.628 kb on - strand, within CCNA_02558
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,702,861 + CCNA_02555 0.46 -0.9 2,702,880 - CCNA_02555 0.50 -1.5 2,702,958 - CCNA_02555 0.68 +2.3 2,702,966 - CCNA_02555 0.70 +1.7 2,702,966 - CCNA_02555 0.70 -0.2 2,702,973 + CCNA_02555 0.71 +1.1 2,702,986 - CCNA_02555 0.74 +1.5 2,702,993 - CCNA_02555 0.76 +1.4 2,702,995 + CCNA_02555 0.77 +1.4 2,702,995 + CCNA_02555 0.77 -2.7 2,702,995 + CCNA_02555 0.77 +2.1 2,702,995 + CCNA_02555 0.77 -0.6 2,702,996 + CCNA_02555 0.77 -0.8 2,703,000 + CCNA_02555 0.78 +1.8 2,703,003 - CCNA_02555 0.78 +0.2 2,703,021 + CCNA_02555 0.83 -1.5 2,703,021 + CCNA_02555 0.83 -1.6 2,703,029 - CCNA_02555 0.84 +0.3 2,703,053 - -0.6 2,703,137 - +1.5 2,703,137 - -1.5 2,703,162 + +0.1 2,703,162 + -0.0 2,703,170 - -0.5 2,703,204 + +0.2 2,703,206 - -0.5 2,703,208 + -1.2 2,703,246 - CCNA_02556 0.16 +2.0 2,703,287 + CCNA_02556 0.24 -0.8 2,703,290 - CCNA_02556 0.24 +1.5 2,703,301 - CCNA_02556 0.26 +1.0 2,703,307 + CCNA_02556 0.27 -0.3 2,703,315 - CCNA_02556 0.28 -0.0 2,703,330 + CCNA_02556 0.31 -0.5 2,703,330 + CCNA_02556 0.31 +1.5 2,703,330 + CCNA_02556 0.31 +0.0 2,703,330 + CCNA_02556 0.31 -0.6 2,703,330 + CCNA_02556 0.31 +2.6 2,703,330 + CCNA_02556 0.31 +0.1 2,703,330 + CCNA_02556 0.31 -0.3 2,703,330 + CCNA_02556 0.31 -3.0 2,703,338 - CCNA_02556 0.32 -1.3 2,703,338 - CCNA_02556 0.32 +0.4 2,703,338 - CCNA_02556 0.32 -0.3 2,703,338 - CCNA_02556 0.32 +0.7 2,703,338 - CCNA_02556 0.32 +1.0 2,703,386 + CCNA_02556 0.41 +3.1 2,703,402 - CCNA_02556 0.43 +2.1 2,703,411 + CCNA_02556 0.45 +0.0 2,703,423 + CCNA_02556 0.47 +0.8 2,703,431 + CCNA_02556 0.48 +1.5 2,703,449 - CCNA_02556 0.51 -2.7 2,703,476 + CCNA_02556 0.56 +1.0 2,703,497 + CCNA_02556 0.60 +0.6 2,703,505 - CCNA_02556 0.61 -0.1 2,703,505 - CCNA_02556 0.61 +1.9 2,703,505 - CCNA_02556 0.61 -0.8 2,703,505 - CCNA_02556 0.61 -3.0 2,703,505 - CCNA_02556 0.61 +0.2 2,703,519 - CCNA_02556 0.63 +1.5 2,703,528 + CCNA_02556 0.65 -0.1 2,703,551 + CCNA_02556 0.69 -0.0 2,703,559 - CCNA_02556 0.70 +2.0 2,703,559 - CCNA_02556 0.70 -1.5 2,703,565 + CCNA_02556 0.71 -0.5 2,703,578 - CCNA_02556 0.74 +2.0 2,703,596 + CCNA_02556 0.77 -1.5 2,703,598 + CCNA_02556 0.77 -0.2 2,703,609 - CCNA_02556 0.79 -1.8 2,703,644 + CCNA_02556 0.85 -0.8 2,703,644 + CCNA_02556 0.85 +0.2 2,703,650 + CCNA_02556 0.86 -2.1 2,703,652 - CCNA_02556 0.86 -2.0 2,703,665 + CCNA_02556 0.88 +0.4 2,703,668 - CCNA_02556 0.89 -0.0 2,703,690 + +3.0 2,703,704 + +1.2 2,703,704 + -2.2 2,703,704 + +0.4 2,703,704 + +0.8 2,703,704 + +1.4 2,703,712 - +1.3 2,703,712 - +1.5 2,703,712 - +1.4 2,703,712 - -0.6 2,703,712 - -1.0 2,703,712 - -0.2 2,703,743 + +1.2 2,703,744 - -0.2 2,703,760 + -0.4 2,703,764 + +0.1 2,703,775 + -0.5 2,703,804 - -0.5 2,703,804 - -0.6 2,703,806 + +0.2 2,703,814 - +1.5 2,703,857 + -0.9 2,703,865 - -0.0 2,703,865 - -0.1 2,703,865 - -1.5 2,703,865 - -1.5 2,703,865 - -0.4 2,703,915 + -1.3 2,703,938 - CCNA_02557 0.11 +0.8 2,703,969 - CCNA_02557 0.15 +1.7 2,704,004 + CCNA_02557 0.19 +2.6 2,704,006 + CCNA_02557 0.20 +1.3 2,704,011 + CCNA_02557 0.20 -0.6 2,704,011 + CCNA_02557 0.20 +2.1 2,704,124 - CCNA_02557 0.34 +0.4 2,704,142 - CCNA_02557 0.37 +2.6 2,704,152 + CCNA_02557 0.38 -1.6 2,704,152 - CCNA_02557 0.38 +1.2 2,704,177 + CCNA_02557 0.41 +0.2 2,704,183 - CCNA_02557 0.42 -0.6 2,704,236 + CCNA_02557 0.49 +0.9 2,704,266 + CCNA_02557 0.52 -0.9 2,704,383 + CCNA_02557 0.67 -0.3 2,704,445 + CCNA_02557 0.75 +0.1 2,704,461 + CCNA_02557 0.77 +0.0 2,704,461 + CCNA_02557 0.77 +0.5 2,704,469 - CCNA_02557 0.78 -0.3 2,704,483 + CCNA_02557 0.80 +1.6 2,704,491 - CCNA_02557 0.81 +0.4 2,704,491 - CCNA_02557 0.81 +0.4 2,704,531 + CCNA_02557 0.86 -2.0 2,704,577 + +1.1 2,704,587 + -0.4 2,704,643 + +2.3 2,704,643 + -0.4 2,704,647 - +0.6 2,704,656 - -0.4 2,704,817 - CCNA_02558 0.10 +0.8 2,704,819 + CCNA_02558 0.10 +1.3 2,704,852 - CCNA_02558 0.13 -0.0 2,704,859 + CCNA_02558 0.13 -0.7 2,704,864 + CCNA_02558 0.13 -0.6 2,704,872 - CCNA_02558 0.14 +0.8 2,704,872 - CCNA_02558 0.14 +0.8 2,704,896 - CCNA_02558 0.15 +2.2 2,704,903 + CCNA_02558 0.16 +0.5 2,704,903 - CCNA_02558 0.16 +1.2 2,704,922 - CCNA_02558 0.17 +1.6 2,704,947 - CCNA_02558 0.19 +1.5 2,704,949 + CCNA_02558 0.19 -0.3 2,704,959 + CCNA_02558 0.19 -2.0 2,704,959 + CCNA_02558 0.19 +2.4 2,704,959 + CCNA_02558 0.19 -0.3 2,704,967 - CCNA_02558 0.20 +0.0 2,704,967 - CCNA_02558 0.20 +0.1 2,704,967 - CCNA_02558 0.20 +0.1 2,704,981 + CCNA_02558 0.21 -0.1 2,705,048 + CCNA_02558 0.25 -0.1 2,705,077 + CCNA_02558 0.27 +1.8 2,705,097 + CCNA_02558 0.28 -2.4 2,705,101 + CCNA_02558 0.28 +0.2 2,705,109 - CCNA_02558 0.29 +1.0 2,705,111 + CCNA_02558 0.29 +2.0 2,705,138 - CCNA_02558 0.31 -0.4 2,705,154 - CCNA_02558 0.32 -0.8 2,705,175 - CCNA_02558 0.33 -0.4 2,705,190 - CCNA_02558 0.34 +0.5 2,705,192 + CCNA_02558 0.34 +0.4 2,705,200 + CCNA_02558 0.34 +2.7 2,705,206 - CCNA_02558 0.35 +0.2 2,705,211 - CCNA_02558 0.35 -0.4 2,705,213 - CCNA_02558 0.35 +2.1 2,705,239 + CCNA_02558 0.37 +1.8 2,705,252 - CCNA_02558 0.38 -0.9 2,705,338 + CCNA_02558 0.43 +1.3 2,705,371 + CCNA_02558 0.45 +1.1 2,705,375 + CCNA_02558 0.45 -0.7 2,705,379 - CCNA_02558 0.46 +0.1 2,705,379 - CCNA_02558 0.46 -0.0 2,705,409 + CCNA_02558 0.48 +1.3 2,705,419 - CCNA_02558 0.48 +1.0 2,705,427 + CCNA_02558 0.49 -1.0 2,705,427 - CCNA_02558 0.49 -1.4 2,705,435 - CCNA_02558 0.49 -0.3 2,705,447 - CCNA_02558 0.50 +1.7 2,705,464 + CCNA_02558 0.51 -0.4 2,705,464 + CCNA_02558 0.51 +1.4 2,705,464 + CCNA_02558 0.51 -1.0 2,705,515 + CCNA_02558 0.54 -0.6 2,705,531 + CCNA_02558 0.55 +2.6 2,705,531 + CCNA_02558 0.55 -1.3 2,705,531 + CCNA_02558 0.55 +0.6 2,705,531 + CCNA_02558 0.55 -2.3 2,705,531 + CCNA_02558 0.55 -0.0 2,705,531 + CCNA_02558 0.55 -0.3 2,705,531 + CCNA_02558 0.55 -2.4 2,705,531 + CCNA_02558 0.55 +0.2 2,705,531 + CCNA_02558 0.55 +0.2 2,705,531 + CCNA_02558 0.55 +1.0 2,705,539 - CCNA_02558 0.56 +1.6 2,705,539 - CCNA_02558 0.56 -0.2 2,705,539 - CCNA_02558 0.56 -0.3 2,705,539 - CCNA_02558 0.56 +0.2 2,705,539 - CCNA_02558 0.56 -0.7 2,705,539 - CCNA_02558 0.56 -0.6 2,705,539 - CCNA_02558 0.56 +1.6 2,705,539 - CCNA_02558 0.56 -1.6 2,705,539 - CCNA_02558 0.56 -1.3 2,705,539 - CCNA_02558 0.56 -0.4 2,705,539 - CCNA_02558 0.56 -0.4 2,705,541 + CCNA_02558 0.56 -0.4 2,705,559 - CCNA_02558 0.57 +0.3 2,705,573 + CCNA_02558 0.58 -1.5 2,705,573 + CCNA_02558 0.58 -1.2 2,705,573 + CCNA_02558 0.58 -0.6 2,705,573 + CCNA_02558 0.58 +1.9 2,705,573 + CCNA_02558 0.58 +0.8 2,705,573 + CCNA_02558 0.58 +0.4 2,705,573 + CCNA_02558 0.58 -1.7 2,705,581 - CCNA_02558 0.58 -0.4 2,705,581 - CCNA_02558 0.58 +1.0 2,705,591 - CCNA_02558 0.59 -1.6 2,705,607 + CCNA_02558 0.60 -2.0 2,705,620 + CCNA_02558 0.61 +0.4 2,705,628 - CCNA_02558 0.61 -1.7
Or see this region's nucleotide sequence