Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01234 and CCNA_01235 are separated by 63 nucleotides CCNA_01235 and CCNA_01236 are separated by 63 nucleotides CCNA_01236 and CCNA_01237 overlap by 4 nucleotides CCNA_01237 and CCNA_01238 are separated by 154 nucleotides CCNA_01238 and CCNA_01239 are separated by 112 nucleotides
CCNA_01234: CCNA_01234 - metal-dependent hydrolase, at 1,361,248 to 1,362,339
_01234
CCNA_01235: CCNA_01235 - AcrR-family transcriptional regulator, at 1,362,403 to 1,363,035
_01235
CCNA_01236: CCNA_01236 - general stress protein GsiB, at 1,363,099 to 1,363,332
_01236
CCNA_01237: CCNA_01237 - hypothetical protein, at 1,363,329 to 1,363,481
_01237
CCNA_01238: CCNA_01238 - EF-hand domain protein, at 1,363,636 to 1,364,364
_01238
CCNA_01239: CCNA_01239 - two-component sensor histidine kinase, at 1,364,477 to 1,365,904
_01239
Position (kb)
1363
1364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1362.367 kb on + strand at 1362.367 kb on + strand at 1362.367 kb on + strand at 1362.367 kb on + strand at 1362.367 kb on + strand at 1362.369 kb on + strand at 1362.372 kb on + strand at 1362.375 kb on - strand at 1362.375 kb on - strand at 1362.422 kb on + strand at 1362.422 kb on + strand at 1362.474 kb on + strand, within CCNA_01235 at 1362.484 kb on + strand, within CCNA_01235 at 1362.498 kb on + strand, within CCNA_01235 at 1362.508 kb on + strand, within CCNA_01235 at 1362.518 kb on + strand, within CCNA_01235 at 1362.536 kb on - strand, within CCNA_01235 at 1362.562 kb on - strand, within CCNA_01235 at 1362.606 kb on - strand, within CCNA_01235 at 1362.616 kb on - strand, within CCNA_01235 at 1362.651 kb on + strand, within CCNA_01235 at 1362.651 kb on + strand, within CCNA_01235 at 1362.675 kb on + strand, within CCNA_01235 at 1362.683 kb on - strand, within CCNA_01235 at 1362.685 kb on + strand, within CCNA_01235 at 1362.687 kb on + strand, within CCNA_01235 at 1362.687 kb on + strand, within CCNA_01235 at 1362.695 kb on - strand, within CCNA_01235 at 1362.695 kb on - strand, within CCNA_01235 at 1362.756 kb on + strand, within CCNA_01235 at 1362.822 kb on + strand, within CCNA_01235 at 1362.822 kb on + strand, within CCNA_01235 at 1362.822 kb on - strand, within CCNA_01235 at 1362.827 kb on + strand, within CCNA_01235 at 1362.878 kb on + strand, within CCNA_01235 at 1362.896 kb on + strand, within CCNA_01235 at 1362.897 kb on + strand, within CCNA_01235 at 1362.916 kb on + strand, within CCNA_01235 at 1362.916 kb on + strand, within CCNA_01235 at 1362.924 kb on - strand, within CCNA_01235 at 1362.931 kb on - strand, within CCNA_01235 at 1362.961 kb on - strand, within CCNA_01235 at 1363.007 kb on + strand at 1363.011 kb on + strand at 1363.011 kb on + strand at 1363.011 kb on + strand at 1363.011 kb on + strand at 1363.015 kb on - strand at 1363.017 kb on - strand at 1363.019 kb on - strand at 1363.062 kb on + strand at 1363.063 kb on + strand at 1363.119 kb on + strand at 1363.134 kb on + strand, within CCNA_01236 at 1363.134 kb on + strand, within CCNA_01236 at 1363.142 kb on - strand, within CCNA_01236 at 1363.322 kb on - strand at 1363.385 kb on + strand, within CCNA_01237 at 1363.434 kb on - strand, within CCNA_01237 at 1363.450 kb on - strand, within CCNA_01237 at 1363.450 kb on - strand, within CCNA_01237 at 1363.484 kb on - strand at 1363.511 kb on - strand at 1363.559 kb on + strand at 1363.579 kb on + strand at 1363.581 kb on + strand at 1363.589 kb on - strand at 1363.589 kb on - strand at 1363.596 kb on + strand at 1363.729 kb on - strand, within CCNA_01238 at 1363.771 kb on - strand, within CCNA_01238 at 1363.773 kb on - strand, within CCNA_01238 at 1363.899 kb on + strand, within CCNA_01238 at 1363.899 kb on + strand, within CCNA_01238 at 1363.899 kb on - strand, within CCNA_01238 at 1363.955 kb on - strand, within CCNA_01238 at 1363.955 kb on - strand, within CCNA_01238 at 1364.061 kb on + strand, within CCNA_01238 at 1364.116 kb on + strand, within CCNA_01238 at 1364.116 kb on + strand, within CCNA_01238 at 1364.116 kb on + strand, within CCNA_01238 at 1364.116 kb on + strand, within CCNA_01238 at 1364.168 kb on + strand, within CCNA_01238 at 1364.268 kb on + strand, within CCNA_01238 at 1364.288 kb on + strand, within CCNA_01238 at 1364.322 kb on - strand at 1364.352 kb on + strand at 1364.360 kb on - strand at 1364.371 kb on + strand at 1364.380 kb on - strand at 1364.380 kb on - strand at 1364.390 kb on - strand at 1364.449 kb on + strand at 1364.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,362,367 + +0.7 1,362,367 + +0.0 1,362,367 + -0.3 1,362,367 + -1.6 1,362,367 + +0.6 1,362,369 + +0.4 1,362,372 + +1.4 1,362,375 - -2.8 1,362,375 - -0.2 1,362,422 + +0.4 1,362,422 + -0.2 1,362,474 + CCNA_01235 0.11 +0.9 1,362,484 + CCNA_01235 0.13 +0.6 1,362,498 + CCNA_01235 0.15 +0.7 1,362,508 + CCNA_01235 0.17 -0.1 1,362,518 + CCNA_01235 0.18 +0.0 1,362,536 - CCNA_01235 0.21 +0.7 1,362,562 - CCNA_01235 0.25 +0.1 1,362,606 - CCNA_01235 0.32 -1.2 1,362,616 - CCNA_01235 0.34 -0.5 1,362,651 + CCNA_01235 0.39 +0.1 1,362,651 + CCNA_01235 0.39 -0.9 1,362,675 + CCNA_01235 0.43 +0.6 1,362,683 - CCNA_01235 0.44 +0.1 1,362,685 + CCNA_01235 0.45 -1.0 1,362,687 + CCNA_01235 0.45 +1.1 1,362,687 + CCNA_01235 0.45 +0.8 1,362,695 - CCNA_01235 0.46 -1.8 1,362,695 - CCNA_01235 0.46 -2.1 1,362,756 + CCNA_01235 0.56 -1.4 1,362,822 + CCNA_01235 0.66 -0.1 1,362,822 + CCNA_01235 0.66 -0.1 1,362,822 - CCNA_01235 0.66 +1.5 1,362,827 + CCNA_01235 0.67 +0.7 1,362,878 + CCNA_01235 0.75 -0.5 1,362,896 + CCNA_01235 0.78 +1.2 1,362,897 + CCNA_01235 0.78 +0.2 1,362,916 + CCNA_01235 0.81 +1.2 1,362,916 + CCNA_01235 0.81 +1.0 1,362,924 - CCNA_01235 0.82 -0.3 1,362,931 - CCNA_01235 0.83 +0.3 1,362,961 - CCNA_01235 0.88 -1.7 1,363,007 + +1.5 1,363,011 + +0.8 1,363,011 + +0.6 1,363,011 + +1.2 1,363,011 + +1.4 1,363,015 - -0.3 1,363,017 - +2.5 1,363,019 - +1.7 1,363,062 + +1.1 1,363,063 + +0.5 1,363,119 + -0.5 1,363,134 + CCNA_01236 0.15 +0.5 1,363,134 + CCNA_01236 0.15 +1.3 1,363,142 - CCNA_01236 0.18 +0.9 1,363,322 - -0.2 1,363,385 + CCNA_01237 0.37 -0.5 1,363,434 - CCNA_01237 0.69 +1.0 1,363,450 - CCNA_01237 0.79 +3.4 1,363,450 - CCNA_01237 0.79 -0.4 1,363,484 - -1.5 1,363,511 - -3.0 1,363,559 + -0.1 1,363,579 + -0.7 1,363,581 + -0.1 1,363,589 - -1.9 1,363,589 - -0.3 1,363,596 + -0.9 1,363,729 - CCNA_01238 0.13 +0.3 1,363,771 - CCNA_01238 0.19 -1.8 1,363,773 - CCNA_01238 0.19 -1.2 1,363,899 + CCNA_01238 0.36 +2.5 1,363,899 + CCNA_01238 0.36 +1.2 1,363,899 - CCNA_01238 0.36 +1.0 1,363,955 - CCNA_01238 0.44 +0.6 1,363,955 - CCNA_01238 0.44 +0.9 1,364,061 + CCNA_01238 0.58 -0.3 1,364,116 + CCNA_01238 0.66 +0.7 1,364,116 + CCNA_01238 0.66 -1.2 1,364,116 + CCNA_01238 0.66 -0.7 1,364,116 + CCNA_01238 0.66 -0.3 1,364,168 + CCNA_01238 0.73 +0.8 1,364,268 + CCNA_01238 0.87 +0.7 1,364,288 + CCNA_01238 0.89 -0.1 1,364,322 - +0.5 1,364,352 + -0.3 1,364,360 - +2.2 1,364,371 + +1.5 1,364,380 - +0.9 1,364,380 - +0.6 1,364,390 - -0.9 1,364,449 + +0.1 1,364,467 - -0.7
Or see this region's nucleotide sequence