Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01060 and CCNA_01061 are separated by 67 nucleotides CCNA_01061 and CCNA_01062 are separated by 139 nucleotides
CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752
_01060
CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130
_01061
CCNA_01062: CCNA_01062 - GDP-mannose 4,6 dehydratase, at 1,166,270 to 1,167,247
_01062
Position (kb)
1164
1165
1166
1167 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 1163.863 kb on + strand, within CCNA_01060 at 1164.163 kb on + strand, within CCNA_01060 at 1164.355 kb on + strand, within CCNA_01060 at 1164.416 kb on + strand, within CCNA_01060 at 1164.441 kb on + strand, within CCNA_01060 at 1164.548 kb on + strand, within CCNA_01060 at 1164.696 kb on - strand at 1164.696 kb on - strand at 1164.734 kb on + strand at 1164.773 kb on + strand at 1164.773 kb on + strand at 1164.892 kb on + strand at 1164.918 kb on - strand at 1164.944 kb on + strand at 1164.992 kb on + strand, within CCNA_01061 at 1165.050 kb on + strand, within CCNA_01061 at 1165.087 kb on + strand, within CCNA_01061 at 1165.166 kb on + strand, within CCNA_01061 at 1165.204 kb on - strand, within CCNA_01061 at 1165.293 kb on - strand, within CCNA_01061 at 1165.367 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.526 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.705 kb on + strand, within CCNA_01061 at 1165.713 kb on - strand, within CCNA_01061 at 1165.891 kb on + strand, within CCNA_01061 at 1166.068 kb on + strand at 1166.133 kb on - strand at 1166.137 kb on + strand at 1166.137 kb on + strand at 1166.154 kb on - strand at 1166.205 kb on + strand at 1166.230 kb on + strand at 1166.230 kb on + strand at 1166.238 kb on - strand at 1166.290 kb on - strand at 1166.308 kb on + strand at 1166.316 kb on - strand at 1166.316 kb on - strand at 1166.321 kb on - strand at 1166.338 kb on + strand at 1166.344 kb on + strand at 1166.344 kb on + strand at 1166.344 kb on + strand at 1166.344 kb on + strand at 1166.344 kb on + strand at 1166.352 kb on - strand at 1166.352 kb on - strand at 1166.352 kb on - strand at 1166.386 kb on - strand, within CCNA_01062 at 1166.420 kb on - strand, within CCNA_01062 at 1166.452 kb on + strand, within CCNA_01062 at 1166.468 kb on + strand, within CCNA_01062 at 1166.506 kb on + strand, within CCNA_01062 at 1166.507 kb on + strand, within CCNA_01062 at 1166.515 kb on - strand, within CCNA_01062 at 1166.522 kb on + strand, within CCNA_01062 at 1166.522 kb on + strand, within CCNA_01062 at 1166.522 kb on + strand, within CCNA_01062 at 1166.543 kb on + strand, within CCNA_01062 at 1166.579 kb on + strand, within CCNA_01062 at 1166.587 kb on - strand, within CCNA_01062 at 1166.599 kb on + strand, within CCNA_01062 at 1166.635 kb on + strand, within CCNA_01062 at 1166.667 kb on + strand, within CCNA_01062 at 1166.675 kb on - strand, within CCNA_01062 at 1166.675 kb on - strand, within CCNA_01062 at 1166.704 kb on + strand, within CCNA_01062 at 1166.712 kb on - strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.737 kb on + strand, within CCNA_01062 at 1166.745 kb on - strand, within CCNA_01062 at 1166.745 kb on - strand, within CCNA_01062 at 1166.745 kb on - strand, within CCNA_01062 at 1166.745 kb on - strand, within CCNA_01062 at 1166.751 kb on + strand, within CCNA_01062 at 1166.755 kb on - strand, within CCNA_01062 at 1166.759 kb on - strand, within CCNA_01062 at 1166.761 kb on + strand, within CCNA_01062 at 1166.775 kb on + strand, within CCNA_01062 at 1166.775 kb on + strand, within CCNA_01062 at 1166.775 kb on + strand, within CCNA_01062 at 1166.783 kb on - strand, within CCNA_01062 at 1166.898 kb on + strand, within CCNA_01062 at 1166.898 kb on - strand, within CCNA_01062 at 1166.934 kb on - strand, within CCNA_01062 at 1166.947 kb on + strand, within CCNA_01062 at 1166.947 kb on + strand, within CCNA_01062 at 1166.947 kb on + strand, within CCNA_01062 at 1166.947 kb on + strand, within CCNA_01062 at 1166.955 kb on - strand, within CCNA_01062 at 1166.955 kb on - strand, within CCNA_01062 at 1166.955 kb on - strand, within CCNA_01062 at 1166.955 kb on - strand, within CCNA_01062 at 1166.962 kb on - strand, within CCNA_01062 at 1166.988 kb on - strand, within CCNA_01062 at 1167.014 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.019 kb on + strand, within CCNA_01062 at 1167.022 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.027 kb on - strand, within CCNA_01062 at 1167.037 kb on + strand, within CCNA_01062 at 1167.039 kb on + strand, within CCNA_01062 at 1167.065 kb on + strand, within CCNA_01062 at 1167.083 kb on - strand, within CCNA_01062
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,163,863 + CCNA_01060 0.49 +5.1 1,164,163 + CCNA_01060 0.66 +5.1 1,164,355 + CCNA_01060 0.77 +4.7 1,164,416 + CCNA_01060 0.81 +5.2 1,164,441 + CCNA_01060 0.82 +4.7 1,164,548 + CCNA_01060 0.88 +3.6 1,164,696 - +0.5 1,164,696 - +1.5 1,164,734 + +0.3 1,164,773 + +1.2 1,164,773 + +0.9 1,164,892 + +4.5 1,164,918 - -0.7 1,164,944 + +7.0 1,164,992 + CCNA_01061 0.13 +4.5 1,165,050 + CCNA_01061 0.18 +3.8 1,165,087 + CCNA_01061 0.20 +4.9 1,165,166 + CCNA_01061 0.26 +4.6 1,165,204 - CCNA_01061 0.29 +3.9 1,165,293 - CCNA_01061 0.36 +2.5 1,165,367 + CCNA_01061 0.42 +4.6 1,165,518 + CCNA_01061 0.53 +4.4 1,165,526 - CCNA_01061 0.54 +4.2 1,165,559 - CCNA_01061 0.56 +5.3 1,165,559 - CCNA_01061 0.56 +5.5 1,165,705 + CCNA_01061 0.68 +2.4 1,165,713 - CCNA_01061 0.68 +1.5 1,165,891 + CCNA_01061 0.82 +3.5 1,166,068 + +6.3 1,166,133 - -1.0 1,166,137 + +0.2 1,166,137 + +1.2 1,166,154 - -2.0 1,166,205 + +0.4 1,166,230 + -0.1 1,166,230 + +1.4 1,166,238 - +0.2 1,166,290 - -1.0 1,166,308 + -1.1 1,166,316 - -0.5 1,166,316 - +3.5 1,166,321 - -1.0 1,166,338 + +1.0 1,166,344 + -0.1 1,166,344 + +0.0 1,166,344 + +0.5 1,166,344 + +0.1 1,166,344 + -0.1 1,166,352 - -1.2 1,166,352 - +1.2 1,166,352 - +0.3 1,166,386 - CCNA_01062 0.12 -0.3 1,166,420 - CCNA_01062 0.15 +0.4 1,166,452 + CCNA_01062 0.19 -0.4 1,166,468 + CCNA_01062 0.20 -1.2 1,166,506 + CCNA_01062 0.24 +1.0 1,166,507 + CCNA_01062 0.24 +0.7 1,166,515 - CCNA_01062 0.25 +1.2 1,166,522 + CCNA_01062 0.26 -0.4 1,166,522 + CCNA_01062 0.26 -0.5 1,166,522 + CCNA_01062 0.26 +0.9 1,166,543 + CCNA_01062 0.28 -0.2 1,166,579 + CCNA_01062 0.32 -2.8 1,166,587 - CCNA_01062 0.32 -1.4 1,166,599 + CCNA_01062 0.34 +0.1 1,166,635 + CCNA_01062 0.37 +0.4 1,166,667 + CCNA_01062 0.41 +0.3 1,166,675 - CCNA_01062 0.41 -0.2 1,166,675 - CCNA_01062 0.41 +0.4 1,166,704 + CCNA_01062 0.44 -0.1 1,166,712 - CCNA_01062 0.45 -0.8 1,166,737 + CCNA_01062 0.48 -0.9 1,166,737 + CCNA_01062 0.48 -0.8 1,166,737 + CCNA_01062 0.48 +0.7 1,166,737 + CCNA_01062 0.48 +0.3 1,166,737 + CCNA_01062 0.48 -0.2 1,166,737 + CCNA_01062 0.48 -0.6 1,166,737 + CCNA_01062 0.48 -0.7 1,166,737 + CCNA_01062 0.48 +0.2 1,166,737 + CCNA_01062 0.48 +0.5 1,166,745 - CCNA_01062 0.49 -1.2 1,166,745 - CCNA_01062 0.49 -0.5 1,166,745 - CCNA_01062 0.49 -0.3 1,166,745 - CCNA_01062 0.49 +0.1 1,166,751 + CCNA_01062 0.49 -0.5 1,166,755 - CCNA_01062 0.50 +1.9 1,166,759 - CCNA_01062 0.50 +0.2 1,166,761 + CCNA_01062 0.50 +0.3 1,166,775 + CCNA_01062 0.52 +0.9 1,166,775 + CCNA_01062 0.52 -0.4 1,166,775 + CCNA_01062 0.52 -0.1 1,166,783 - CCNA_01062 0.52 +1.2 1,166,898 + CCNA_01062 0.64 +0.4 1,166,898 - CCNA_01062 0.64 +1.5 1,166,934 - CCNA_01062 0.68 -1.5 1,166,947 + CCNA_01062 0.69 -0.5 1,166,947 + CCNA_01062 0.69 -1.3 1,166,947 + CCNA_01062 0.69 +0.3 1,166,947 + CCNA_01062 0.69 +0.1 1,166,955 - CCNA_01062 0.70 -0.3 1,166,955 - CCNA_01062 0.70 -1.8 1,166,955 - CCNA_01062 0.70 -1.3 1,166,955 - CCNA_01062 0.70 +2.1 1,166,962 - CCNA_01062 0.71 +0.3 1,166,988 - CCNA_01062 0.73 -1.0 1,167,014 + CCNA_01062 0.76 +0.4 1,167,019 + CCNA_01062 0.77 +0.4 1,167,019 + CCNA_01062 0.77 -1.0 1,167,019 + CCNA_01062 0.77 -0.2 1,167,019 + CCNA_01062 0.77 -0.2 1,167,019 + CCNA_01062 0.77 -2.5 1,167,019 + CCNA_01062 0.77 +0.4 1,167,019 + CCNA_01062 0.77 -0.8 1,167,019 + CCNA_01062 0.77 -1.1 1,167,019 + CCNA_01062 0.77 +1.1 1,167,022 - CCNA_01062 0.77 +1.0 1,167,027 - CCNA_01062 0.77 -0.5 1,167,027 - CCNA_01062 0.77 -0.8 1,167,027 - CCNA_01062 0.77 +1.5 1,167,027 - CCNA_01062 0.77 +0.9 1,167,027 - CCNA_01062 0.77 -0.3 1,167,027 - CCNA_01062 0.77 -0.5 1,167,027 - CCNA_01062 0.77 -2.3 1,167,027 - CCNA_01062 0.77 -3.2 1,167,027 - CCNA_01062 0.77 -0.8 1,167,037 + CCNA_01062 0.78 -1.0 1,167,039 + CCNA_01062 0.79 -0.5 1,167,065 + CCNA_01062 0.81 +0.8 1,167,083 - CCNA_01062 0.83 -1.7
Or see this region's nucleotide sequence