Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01059 and CCNA_01060 are separated by 242 nucleotides CCNA_01060 and CCNA_01061 are separated by 67 nucleotides
CCNA_01059: CCNA_01059 - S-layer protein rsaA, at 1,159,693 to 1,162,773
_01059
CCNA_01060: CCNA_01060 - type I protein secretion ATP-binding protein RsaD, at 1,163,016 to 1,164,752
_01060
CCNA_01061: CCNA_01061 - type I secretion adaptor protein RsaE, at 1,164,820 to 1,166,130
_01061
Position (kb)
1163
1164
1165 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 1162.257 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.359 kb on + strand, within CCNA_01059 at 1162.382 kb on + strand, within CCNA_01059 at 1162.796 kb on + strand at 1162.888 kb on - strand at 1162.981 kb on - strand at 1163.057 kb on + strand at 1163.087 kb on - strand at 1163.265 kb on - strand, within CCNA_01060 at 1163.315 kb on + strand, within CCNA_01060 at 1163.396 kb on + strand, within CCNA_01060 at 1163.404 kb on - strand, within CCNA_01060 at 1163.613 kb on - strand, within CCNA_01060 at 1163.636 kb on + strand, within CCNA_01060 at 1163.764 kb on - strand, within CCNA_01060 at 1163.863 kb on + strand, within CCNA_01060 at 1164.163 kb on + strand, within CCNA_01060 at 1164.355 kb on + strand, within CCNA_01060 at 1164.416 kb on + strand, within CCNA_01060 at 1164.441 kb on + strand, within CCNA_01060 at 1164.548 kb on + strand, within CCNA_01060 at 1164.696 kb on - strand at 1164.696 kb on - strand at 1164.734 kb on + strand at 1164.773 kb on + strand at 1164.773 kb on + strand at 1164.892 kb on + strand at 1164.918 kb on - strand at 1164.944 kb on + strand at 1164.992 kb on + strand, within CCNA_01061 at 1165.050 kb on + strand, within CCNA_01061 at 1165.087 kb on + strand, within CCNA_01061 at 1165.166 kb on + strand, within CCNA_01061 at 1165.204 kb on - strand, within CCNA_01061 at 1165.293 kb on - strand, within CCNA_01061 at 1165.367 kb on + strand, within CCNA_01061 at 1165.518 kb on + strand, within CCNA_01061 at 1165.526 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.559 kb on - strand, within CCNA_01061 at 1165.705 kb on + strand, within CCNA_01061 at 1165.713 kb on - strand, within CCNA_01061
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 1,162,257 + CCNA_01059 0.83 -0.9 1,162,359 + CCNA_01059 0.87 -0.5 1,162,359 + CCNA_01059 0.87 +0.9 1,162,382 + CCNA_01059 0.87 +0.1 1,162,796 + -0.8 1,162,888 - +0.6 1,162,981 - +1.5 1,163,057 + +3.9 1,163,087 - +4.2 1,163,265 - CCNA_01060 0.14 +0.9 1,163,315 + CCNA_01060 0.17 +4.3 1,163,396 + CCNA_01060 0.22 +3.4 1,163,404 - CCNA_01060 0.22 +4.1 1,163,613 - CCNA_01060 0.34 +1.2 1,163,636 + CCNA_01060 0.36 +4.9 1,163,764 - CCNA_01060 0.43 +4.4 1,163,863 + CCNA_01060 0.49 +5.1 1,164,163 + CCNA_01060 0.66 +5.1 1,164,355 + CCNA_01060 0.77 +4.7 1,164,416 + CCNA_01060 0.81 +5.2 1,164,441 + CCNA_01060 0.82 +4.7 1,164,548 + CCNA_01060 0.88 +3.6 1,164,696 - +0.5 1,164,696 - +1.5 1,164,734 + +0.3 1,164,773 + +1.2 1,164,773 + +0.9 1,164,892 + +4.5 1,164,918 - -0.7 1,164,944 + +7.0 1,164,992 + CCNA_01061 0.13 +4.5 1,165,050 + CCNA_01061 0.18 +3.8 1,165,087 + CCNA_01061 0.20 +4.9 1,165,166 + CCNA_01061 0.26 +4.6 1,165,204 - CCNA_01061 0.29 +3.9 1,165,293 - CCNA_01061 0.36 +2.5 1,165,367 + CCNA_01061 0.42 +4.6 1,165,518 + CCNA_01061 0.53 +4.4 1,165,526 - CCNA_01061 0.54 +4.2 1,165,559 - CCNA_01061 0.56 +5.3 1,165,559 - CCNA_01061 0.56 +5.5 1,165,705 + CCNA_01061 0.68 +2.4 1,165,713 - CCNA_01061 0.68 +1.5
Or see this region's nucleotide sequence