Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2522 and Ac3H11_2523 are separated by 40 nucleotides Ac3H11_2523 and Ac3H11_2524 are separated by 190 nucleotides Ac3H11_2524 and Ac3H11_2525 are separated by 1 nucleotides
Ac3H11_2522 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 798,397 to 799,572
_2522
Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712
_2523
Ac3H11_2524 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 801,903 to 802,598
_2524
Ac3H11_2525 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 802,600 to 803,385
_2525
Position (kb) 799
800
801
802 Strain fitness (log2 ratio) -2
-1
0
1 at 798.789 kb on - strand, within Ac3H11_2522 at 798.789 kb on - strand, within Ac3H11_2522 at 798.789 kb on - strand, within Ac3H11_2522 at 798.891 kb on + strand, within Ac3H11_2522 at 798.891 kb on + strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 798.892 kb on - strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.067 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.097 kb on + strand, within Ac3H11_2522 at 799.098 kb on - strand, within Ac3H11_2522 at 799.098 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.140 kb on - strand, within Ac3H11_2522 at 799.443 kb on + strand, within Ac3H11_2522 at 799.456 kb on + strand at 799.457 kb on - strand at 799.592 kb on + strand at 799.592 kb on + strand at 799.592 kb on + strand at 799.610 kb on + strand at 799.610 kb on + strand at 799.611 kb on - strand at 799.611 kb on - strand at 799.614 kb on + strand at 799.614 kb on + strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.615 kb on - strand at 799.749 kb on + strand at 799.749 kb on + strand at 799.749 kb on + strand at 799.750 kb on - strand at 799.797 kb on + strand at 799.797 kb on + strand at 799.797 kb on + strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.798 kb on - strand at 799.999 kb on - strand, within Ac3H11_2523 at 799.999 kb on - strand, within Ac3H11_2523 at 800.070 kb on + strand, within Ac3H11_2523 at 800.070 kb on + strand, within Ac3H11_2523 at 800.071 kb on - strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.244 kb on + strand, within Ac3H11_2523 at 800.245 kb on - strand, within Ac3H11_2523 at 800.473 kb on + strand, within Ac3H11_2523 at 800.473 kb on + strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.474 kb on - strand, within Ac3H11_2523 at 800.640 kb on + strand, within Ac3H11_2523 at 800.640 kb on + strand, within Ac3H11_2523 at 800.640 kb on + strand, within Ac3H11_2523 at 800.640 kb on + strand, within Ac3H11_2523 at 800.640 kb on + strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.641 kb on - strand, within Ac3H11_2523 at 800.682 kb on + strand, within Ac3H11_2523 at 800.682 kb on + strand, within Ac3H11_2523 at 800.683 kb on - strand, within Ac3H11_2523 at 801.066 kb on + strand, within Ac3H11_2523 at 801.066 kb on + strand, within Ac3H11_2523 at 801.066 kb on + strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.379 kb on - strand, within Ac3H11_2523 at 801.699 kb on + strand at 801.699 kb on + strand at 801.699 kb on + strand at 801.699 kb on + strand at 801.700 kb on - strand at 801.700 kb on - strand at 801.700 kb on - strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.838 kb on - strand at 801.865 kb on - strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.936 kb on - strand at 802.081 kb on + strand at 802.082 kb on - strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.364 kb on - strand, within Ac3H11_2524 at 802.364 kb on - strand, within Ac3H11_2524 at 802.567 kb on + strand at 802.570 kb on + strand at 802.570 kb on + strand at 802.570 kb on + strand at 802.571 kb on - strand at 802.571 kb on - strand at 802.643 kb on + strand at 802.643 kb on + strand at 802.644 kb on - strand at 802.709 kb on + strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 798,789 - Ac3H11_2522 0.33 +0.3 798,789 - Ac3H11_2522 0.33 -0.2 798,789 - Ac3H11_2522 0.33 +0.1 798,891 + Ac3H11_2522 0.42 -0.3 798,891 + Ac3H11_2522 0.42 +0.3 798,892 - Ac3H11_2522 0.42 +0.9 798,892 - Ac3H11_2522 0.42 -0.2 798,892 - Ac3H11_2522 0.42 -0.6 798,892 - Ac3H11_2522 0.42 -0.4 799,067 + Ac3H11_2522 0.57 +0.2 799,067 + Ac3H11_2522 0.57 -0.4 799,067 + Ac3H11_2522 0.57 -0.0 799,097 + Ac3H11_2522 0.60 +0.9 799,097 + Ac3H11_2522 0.60 -0.6 799,097 + Ac3H11_2522 0.60 -1.0 799,098 - Ac3H11_2522 0.60 -1.9 799,098 - Ac3H11_2522 0.60 -0.3 799,140 - Ac3H11_2522 0.63 +0.1 799,140 - Ac3H11_2522 0.63 -0.7 799,140 - Ac3H11_2522 0.63 -0.2 799,443 + Ac3H11_2522 0.89 +1.3 799,456 + +1.0 799,457 - +0.1 799,592 + -0.6 799,592 + +0.2 799,592 + -0.7 799,610 + -0.2 799,610 + +1.0 799,611 - +0.8 799,611 - +1.0 799,614 + -0.4 799,614 + -1.1 799,615 - +0.5 799,615 - +0.1 799,615 - +1.3 799,615 - +0.4 799,615 - +0.5 799,615 - -0.2 799,749 + +0.4 799,749 + +0.2 799,749 + +0.3 799,750 - +0.3 799,797 + +0.5 799,797 + +1.0 799,797 + +0.1 799,798 - -0.1 799,798 - -0.5 799,798 - -0.6 799,798 - -1.0 799,798 - -0.8 799,798 - +0.6 799,999 - Ac3H11_2523 0.18 +0.4 799,999 - Ac3H11_2523 0.18 -1.5 800,070 + Ac3H11_2523 0.22 +0.4 800,070 + Ac3H11_2523 0.22 +0.9 800,071 - Ac3H11_2523 0.22 -0.8 800,244 + Ac3H11_2523 0.30 +0.8 800,244 + Ac3H11_2523 0.30 +0.3 800,244 + Ac3H11_2523 0.30 -1.2 800,244 + Ac3H11_2523 0.30 -1.4 800,244 + Ac3H11_2523 0.30 -0.3 800,245 - Ac3H11_2523 0.30 +0.2 800,473 + Ac3H11_2523 0.41 +0.3 800,473 + Ac3H11_2523 0.41 +0.1 800,474 - Ac3H11_2523 0.41 -0.8 800,474 - Ac3H11_2523 0.41 +1.5 800,474 - Ac3H11_2523 0.41 +0.2 800,474 - Ac3H11_2523 0.41 -1.2 800,474 - Ac3H11_2523 0.41 +0.8 800,474 - Ac3H11_2523 0.41 +1.4 800,640 + Ac3H11_2523 0.49 +0.5 800,640 + Ac3H11_2523 0.49 -0.7 800,640 + Ac3H11_2523 0.49 -0.1 800,640 + Ac3H11_2523 0.49 -0.5 800,640 + Ac3H11_2523 0.49 +0.2 800,641 - Ac3H11_2523 0.49 -0.3 800,641 - Ac3H11_2523 0.49 +0.0 800,641 - Ac3H11_2523 0.49 +1.4 800,641 - Ac3H11_2523 0.49 -0.3 800,641 - Ac3H11_2523 0.49 +0.8 800,641 - Ac3H11_2523 0.49 -0.2 800,682 + Ac3H11_2523 0.51 -0.2 800,682 + Ac3H11_2523 0.51 -0.6 800,683 - Ac3H11_2523 0.51 +0.0 801,066 + Ac3H11_2523 0.69 +1.2 801,066 + Ac3H11_2523 0.69 -0.1 801,066 + Ac3H11_2523 0.69 +0.3 801,067 - Ac3H11_2523 0.69 -0.9 801,067 - Ac3H11_2523 0.69 +0.6 801,067 - Ac3H11_2523 0.69 -0.5 801,067 - Ac3H11_2523 0.69 -1.2 801,067 - Ac3H11_2523 0.69 +0.1 801,067 - Ac3H11_2523 0.69 +0.1 801,067 - Ac3H11_2523 0.69 +1.5 801,379 - Ac3H11_2523 0.84 -0.7 801,699 + +0.3 801,699 + +0.4 801,699 + +0.1 801,699 + +0.0 801,700 - -0.7 801,700 - +0.3 801,700 - +0.0 801,764 + -0.9 801,764 + -0.7 801,764 + +1.0 801,838 - -0.1 801,865 - -0.2 801,931 + -0.2 801,931 + +0.4 801,931 + -0.1 801,931 + +0.6 801,931 + -0.1 801,931 + -0.1 801,931 + -0.1 801,931 + -0.4 801,931 + -0.1 801,931 + +0.5 801,932 - +0.2 801,932 - +0.4 801,932 - +0.3 801,932 - -0.7 801,932 - -0.5 801,932 - +0.2 801,932 - +0.3 801,932 - +0.1 801,932 - -0.5 801,932 - +0.7 801,935 + +0.4 801,935 + +0.9 801,935 + +0.6 801,935 + +0.6 801,935 + -0.7 801,935 + -0.4 801,935 + +1.7 801,935 + -0.5 801,936 - -0.1 802,081 + +1.6 802,082 - Ac3H11_2524 0.26 -0.5 802,255 + Ac3H11_2524 0.51 -1.8 802,255 + Ac3H11_2524 0.51 +0.0 802,255 + Ac3H11_2524 0.51 -0.2 802,255 + Ac3H11_2524 0.51 -0.5 802,255 + Ac3H11_2524 0.51 -0.6 802,255 + Ac3H11_2524 0.51 -0.7 802,255 + Ac3H11_2524 0.51 -1.2 802,256 - Ac3H11_2524 0.51 -0.6 802,256 - Ac3H11_2524 0.51 +0.0 802,256 - Ac3H11_2524 0.51 -0.3 802,364 - Ac3H11_2524 0.66 -1.1 802,364 - Ac3H11_2524 0.66 -0.7 802,567 + +0.2 802,570 + +0.3 802,570 + +0.3 802,570 + +0.3 802,571 - -0.3 802,571 - -1.6 802,643 + -0.7 802,643 + +0.0 802,644 - -0.6 802,709 + Ac3H11_2525 0.14 -0.7 802,710 - Ac3H11_2525 0.14 -0.7 802,710 - Ac3H11_2525 0.14 -0.8 802,710 - Ac3H11_2525 0.14 -2.4
Or see this region's nucleotide sequence