Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30220 and AZOBR_RS30225 are separated by 30 nucleotides AZOBR_RS30225 and AZOBR_RS30230 are separated by 68 nucleotides AZOBR_RS30230 and AZOBR_RS30235 are separated by 269 nucleotides
AZOBR_RS30220: AZOBR_RS30220 - 3-ketoacyl-ACP reductase, at 126,751 to 127,515
_RS30220
AZOBR_RS30225: AZOBR_RS30225 - 5-keto-4-deoxyuronate isomerase, at 127,546 to 128,382
_RS30225
AZOBR_RS30230: AZOBR_RS30230 - GntR family transcriptional regulator, at 128,451 to 129,152
_RS30230
AZOBR_RS30235: AZOBR_RS30235 - 2-keto-3-deoxygluconate permease, at 129,422 to 130,375
_RS30235
Position (kb) 128
129
130 Strain fitness (log2 ratio) -1
0
1
2
3 at 127.521 kb on + strand at 127.522 kb on - strand at 127.563 kb on + strand at 127.625 kb on + strand at 127.625 kb on + strand at 127.626 kb on - strand at 127.626 kb on - strand at 127.763 kb on + strand, within AZOBR_RS30225 at 127.769 kb on + strand, within AZOBR_RS30225 at 127.769 kb on + strand, within AZOBR_RS30225 at 127.769 kb on + strand, within AZOBR_RS30225 at 127.769 kb on + strand, within AZOBR_RS30225 at 127.770 kb on - strand, within AZOBR_RS30225 at 127.770 kb on - strand, within AZOBR_RS30225 at 127.770 kb on - strand, within AZOBR_RS30225 at 127.770 kb on - strand, within AZOBR_RS30225 at 127.892 kb on + strand, within AZOBR_RS30225 at 127.892 kb on + strand, within AZOBR_RS30225 at 127.892 kb on + strand, within AZOBR_RS30225 at 127.893 kb on - strand, within AZOBR_RS30225 at 127.893 kb on - strand, within AZOBR_RS30225 at 127.893 kb on - strand, within AZOBR_RS30225 at 128.003 kb on + strand, within AZOBR_RS30225 at 128.003 kb on + strand, within AZOBR_RS30225 at 128.004 kb on - strand, within AZOBR_RS30225 at 128.069 kb on + strand, within AZOBR_RS30225 at 128.070 kb on - strand, within AZOBR_RS30225 at 128.070 kb on - strand, within AZOBR_RS30225 at 128.070 kb on - strand, within AZOBR_RS30225 at 128.070 kb on - strand, within AZOBR_RS30225 at 128.261 kb on + strand, within AZOBR_RS30225 at 128.261 kb on + strand, within AZOBR_RS30225 at 128.262 kb on - strand, within AZOBR_RS30225 at 128.262 kb on - strand, within AZOBR_RS30225 at 128.333 kb on + strand at 128.334 kb on - strand at 128.693 kb on - strand, within AZOBR_RS30230 at 128.840 kb on - strand, within AZOBR_RS30230 at 129.135 kb on + strand at 129.135 kb on + strand at 129.135 kb on + strand at 129.249 kb on + strand at 129.418 kb on - strand at 129.999 kb on + strand, within AZOBR_RS30235 at 129.999 kb on + strand, within AZOBR_RS30235 at 129.999 kb on + strand, within AZOBR_RS30235 at 129.999 kb on + strand, within AZOBR_RS30235 at 129.999 kb on + strand, within AZOBR_RS30235 at 129.999 kb on + strand at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235 at 130.000 kb on - strand, within AZOBR_RS30235
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 127,521 + -0.7 127,522 - +0.9 127,563 + -0.0 127,625 + -0.1 127,625 + +1.0 127,626 - +1.0 127,626 - +0.1 127,763 + AZOBR_RS30225 0.26 -1.0 127,769 + AZOBR_RS30225 0.27 -0.1 127,769 + AZOBR_RS30225 0.27 -0.6 127,769 + AZOBR_RS30225 0.27 -0.8 127,769 + AZOBR_RS30225 0.27 -0.9 127,770 - AZOBR_RS30225 0.27 -1.6 127,770 - AZOBR_RS30225 0.27 -0.9 127,770 - AZOBR_RS30225 0.27 +0.2 127,770 - AZOBR_RS30225 0.27 -0.2 127,892 + AZOBR_RS30225 0.41 -0.7 127,892 + AZOBR_RS30225 0.41 +0.3 127,892 + AZOBR_RS30225 0.41 -0.0 127,893 - AZOBR_RS30225 0.41 -0.2 127,893 - AZOBR_RS30225 0.41 -0.1 127,893 - AZOBR_RS30225 0.41 -0.2 128,003 + AZOBR_RS30225 0.55 -0.4 128,003 + AZOBR_RS30225 0.55 +0.9 128,004 - AZOBR_RS30225 0.55 +3.0 128,069 + AZOBR_RS30225 0.62 -0.7 128,070 - AZOBR_RS30225 0.63 +0.3 128,070 - AZOBR_RS30225 0.63 +0.1 128,070 - AZOBR_RS30225 0.63 -0.0 128,070 - AZOBR_RS30225 0.63 +0.8 128,261 + AZOBR_RS30225 0.85 +0.5 128,261 + AZOBR_RS30225 0.85 +0.2 128,262 - AZOBR_RS30225 0.86 +1.2 128,262 - AZOBR_RS30225 0.86 -0.2 128,333 + -0.2 128,334 - -0.1 128,693 - AZOBR_RS30230 0.34 +0.9 128,840 - AZOBR_RS30230 0.55 +0.4 129,135 + +1.3 129,135 + +0.0 129,135 + +0.6 129,249 + +0.2 129,418 - +0.4 129,999 + AZOBR_RS30235 0.60 -0.0 129,999 + AZOBR_RS30235 0.60 +0.3 129,999 + AZOBR_RS30235 0.60 -0.3 129,999 + AZOBR_RS30235 0.60 +0.9 129,999 + AZOBR_RS30235 0.60 -0.0 129,999 + +2.0 130,000 - AZOBR_RS30235 0.61 -0.3 130,000 - AZOBR_RS30235 0.61 +0.3 130,000 - AZOBR_RS30235 0.61 -0.0 130,000 - AZOBR_RS30235 0.61 -0.1 130,000 - AZOBR_RS30235 0.61 +0.2 130,000 - AZOBR_RS30235 0.61 +0.0 130,000 - AZOBR_RS30235 0.61 +0.1 130,000 - AZOBR_RS30235 0.61 -1.1
Or see this region's nucleotide sequence