Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20570

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20560 and AZOBR_RS20570 are separated by 642 nucleotidesAZOBR_RS20570 and AZOBR_RS20575 overlap by 8 nucleotides AZOBR_RS20560: AZOBR_RS20560 - hypothetical protein, at 1,378,825 to 1,379,175 _RS20560 AZOBR_RS20570: AZOBR_RS20570 - dihydroorotase, at 1,379,818 to 1,381,122 _RS20570 AZOBR_RS20575: AZOBR_RS20575 - aspartate carbamoyltransferase, at 1,381,115 to 1,382,077 _RS20575 Position (kb) 1379 1380 1381 1382Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1378.975 kb on + strand, within AZOBR_RS20560at 1378.975 kb on + strand, within AZOBR_RS20560at 1378.975 kb on + strand, within AZOBR_RS20560at 1378.975 kb on + strand, within AZOBR_RS20560at 1378.976 kb on - strand, within AZOBR_RS20560at 1378.976 kb on - strand, within AZOBR_RS20560at 1378.976 kb on - strand, within AZOBR_RS20560at 1378.976 kb on - strand, within AZOBR_RS20560at 1381.330 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.336 kb on - strand, within AZOBR_RS20575at 1381.357 kb on - strand, within AZOBR_RS20575at 1382.089 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strandat 1382.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,378,975 + AZOBR_RS20560 0.43 +0.6
1,378,975 + AZOBR_RS20560 0.43 -1.0
1,378,975 + AZOBR_RS20560 0.43 +0.5
1,378,975 + AZOBR_RS20560 0.43 +0.0
1,378,976 - AZOBR_RS20560 0.43 +0.2
1,378,976 - AZOBR_RS20560 0.43 +1.6
1,378,976 - AZOBR_RS20560 0.43 -0.0
1,378,976 - AZOBR_RS20560 0.43 -0.3
1,381,330 - AZOBR_RS20575 0.22 -1.3
1,381,336 - AZOBR_RS20575 0.23 -1.1
1,381,336 - AZOBR_RS20575 0.23 +1.9
1,381,336 - AZOBR_RS20575 0.23 -0.7
1,381,357 - AZOBR_RS20575 0.25 -3.9
1,382,089 - -1.4
1,382,091 - +0.4
1,382,091 - -1.7
1,382,091 - -0.3
1,382,091 - +0.4
1,382,091 - +0.5

Or see this region's nucleotide sequence