Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS13665 and ABZR86_RS13670 are separated by 95 nucleotides ABZR86_RS13670 and ABZR86_RS13675 are separated by 100 nucleotides ABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotides ABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotides
ABZR86_RS13665: ABZR86_RS13665 - DUF2974 domain-containing protein, at 3,054,202 to 3,055,182
_RS13665
ABZR86_RS13670: ABZR86_RS13670 - ankyrin repeat domain-containing protein, at 3,055,278 to 3,056,033
_RS13670
ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501
_RS13675
ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220
_RS13680
ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716
_RS13685
Position (kb)
3056
3057
3058 Strain fitness (log2 ratio)
-1
0
1 at 3055.233 kb on + strand at 3055.234 kb on - strand at 3055.234 kb on - strand at 3055.390 kb on + strand, within ABZR86_RS13670 at 3055.457 kb on + strand, within ABZR86_RS13670 at 3055.458 kb on - strand, within ABZR86_RS13670 at 3055.648 kb on - strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.920 kb on + strand, within ABZR86_RS13670 at 3055.921 kb on - strand, within ABZR86_RS13670 at 3055.921 kb on - strand, within ABZR86_RS13670 at 3056.031 kb on + strand at 3056.032 kb on - strand at 3056.042 kb on + strand at 3056.043 kb on - strand at 3056.043 kb on - strand at 3056.043 kb on - strand at 3056.162 kb on + strand at 3056.163 kb on - strand at 3056.163 kb on - strand at 3057.927 kb on - strand, within ABZR86_RS13680 at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.163 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.169 kb on + strand at 3058.170 kb on - strand at 3058.170 kb on - strand at 3058.221 kb on - strand at 3058.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 3,055,233 + -1.6 3,055,234 - -0.9 3,055,234 - +0.7 3,055,390 + ABZR86_RS13670 0.15 -0.5 3,055,457 + ABZR86_RS13670 0.24 -0.3 3,055,458 - ABZR86_RS13670 0.24 -0.5 3,055,648 - ABZR86_RS13670 0.49 -0.1 3,055,920 + ABZR86_RS13670 0.85 +0.4 3,055,920 + ABZR86_RS13670 0.85 -0.1 3,055,920 + ABZR86_RS13670 0.85 +0.6 3,055,920 + ABZR86_RS13670 0.85 -0.7 3,055,921 - ABZR86_RS13670 0.85 -0.3 3,055,921 - ABZR86_RS13670 0.85 -0.3 3,056,031 + -0.7 3,056,032 - -0.3 3,056,042 + +1.4 3,056,043 - +0.7 3,056,043 - +0.1 3,056,043 - +0.9 3,056,162 + -1.4 3,056,163 - +0.3 3,056,163 - +0.7 3,057,927 - ABZR86_RS13680 0.59 +0.5 3,058,163 + -0.1 3,058,163 + -0.9 3,058,163 + +0.4 3,058,169 + +0.7 3,058,169 + +0.4 3,058,169 + +0.4 3,058,170 - +0.1 3,058,170 - -0.7 3,058,221 - +0.8 3,058,221 - +0.2
Or see this region's nucleotide sequence