Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08890 and ABZR86_RS08895 are separated by 16 nucleotides ABZR86_RS08895 and ABZR86_RS08900 are separated by 62 nucleotides ABZR86_RS08900 and ABZR86_RS08905 are separated by 12 nucleotides ABZR86_RS08905 and ABZR86_RS08910 overlap by 4 nucleotides
ABZR86_RS08890: ABZR86_RS08890 - hypothetical protein, at 1,984,927 to 1,985,247
_RS08890
ABZR86_RS08895: ABZR86_RS08895 - SDR family oxidoreductase, at 1,985,264 to 1,986,055
_RS08895
ABZR86_RS08900: ABZR86_RS08900 - aldehyde dehydrogenase, at 1,986,118 to 1,987,569
_RS08900
ABZR86_RS08905: ABZR86_RS08905 - carbonate dehydratase, at 1,987,582 to 1,988,250
_RS08905
ABZR86_RS08910: ABZR86_RS08910 - RidA family protein, at 1,988,247 to 1,988,672
_RS08910
Position (kb) 1986
1987
1988 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1985.177 kb on - strand, within ABZR86_RS08890 at 1985.227 kb on + strand at 1985.227 kb on + strand at 1985.227 kb on + strand at 1985.228 kb on - strand at 1985.228 kb on - strand at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.422 kb on + strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.423 kb on - strand, within ABZR86_RS08895 at 1985.828 kb on + strand, within ABZR86_RS08895 at 1985.999 kb on + strand at 1985.999 kb on + strand at 1986.000 kb on - strand at 1986.000 kb on - strand at 1986.105 kb on + strand at 1986.106 kb on - strand at 1986.106 kb on - strand at 1986.458 kb on - strand, within ABZR86_RS08900 at 1986.523 kb on + strand, within ABZR86_RS08900 at 1986.523 kb on + strand, within ABZR86_RS08900 at 1986.523 kb on + strand, within ABZR86_RS08900 at 1986.524 kb on - strand, within ABZR86_RS08900 at 1986.583 kb on + strand, within ABZR86_RS08900 at 1986.583 kb on + strand, within ABZR86_RS08900 at 1987.009 kb on + strand, within ABZR86_RS08900 at 1987.010 kb on - strand, within ABZR86_RS08900 at 1987.010 kb on - strand, within ABZR86_RS08900 at 1987.030 kb on + strand, within ABZR86_RS08900 at 1987.031 kb on - strand, within ABZR86_RS08900 at 1987.101 kb on - strand, within ABZR86_RS08900 at 1987.219 kb on + strand, within ABZR86_RS08900 at 1987.219 kb on + strand, within ABZR86_RS08900 at 1987.220 kb on - strand, within ABZR86_RS08900 at 1987.355 kb on - strand, within ABZR86_RS08900 at 1987.374 kb on - strand, within ABZR86_RS08900 at 1987.565 kb on - strand at 1987.567 kb on + strand at 1987.568 kb on - strand at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.693 kb on + strand, within ABZR86_RS08905 at 1987.694 kb on - strand, within ABZR86_RS08905 at 1987.844 kb on + strand, within ABZR86_RS08905 at 1987.844 kb on + strand, within ABZR86_RS08905 at 1987.844 kb on + strand, within ABZR86_RS08905 at 1987.844 kb on + strand, within ABZR86_RS08905 at 1987.845 kb on - strand, within ABZR86_RS08905 at 1987.845 kb on - strand, within ABZR86_RS08905 at 1987.845 kb on - strand, within ABZR86_RS08905 at 1987.845 kb on - strand, within ABZR86_RS08905 at 1988.016 kb on + strand, within ABZR86_RS08905 at 1988.129 kb on - strand, within ABZR86_RS08905 at 1988.129 kb on - strand, within ABZR86_RS08905 at 1988.129 kb on - strand, within ABZR86_RS08905 at 1988.129 kb on - strand, within ABZR86_RS08905 at 1988.129 kb on - strand, within ABZR86_RS08905 at 1988.191 kb on + strand at 1988.200 kb on + strand at 1988.201 kb on - strand at 1988.201 kb on - strand at 1988.412 kb on + strand, within ABZR86_RS08910 at 1988.412 kb on + strand, within ABZR86_RS08910 at 1988.412 kb on + strand, within ABZR86_RS08910 at 1988.413 kb on - strand, within ABZR86_RS08910 at 1988.440 kb on + strand, within ABZR86_RS08910 at 1988.440 kb on + strand, within ABZR86_RS08910 at 1988.441 kb on - strand, within ABZR86_RS08910 at 1988.545 kb on - strand, within ABZR86_RS08910 at 1988.545 kb on - strand, within ABZR86_RS08910 at 1988.545 kb on - strand, within ABZR86_RS08910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 1,985,177 - ABZR86_RS08890 0.78 +1.7 1,985,227 + +0.2 1,985,227 + +1.0 1,985,227 + +0.8 1,985,228 - -0.1 1,985,228 - -1.3 1,985,422 + ABZR86_RS08895 0.20 +2.0 1,985,422 + ABZR86_RS08895 0.20 +0.4 1,985,422 + ABZR86_RS08895 0.20 +0.2 1,985,423 - ABZR86_RS08895 0.20 +0.4 1,985,423 - ABZR86_RS08895 0.20 +1.3 1,985,423 - ABZR86_RS08895 0.20 -0.7 1,985,423 - ABZR86_RS08895 0.20 -0.2 1,985,828 + ABZR86_RS08895 0.71 +0.5 1,985,999 + -0.7 1,985,999 + -0.7 1,986,000 - -1.2 1,986,000 - -0.5 1,986,105 + +0.7 1,986,106 - -0.0 1,986,106 - -0.1 1,986,458 - ABZR86_RS08900 0.23 -0.2 1,986,523 + ABZR86_RS08900 0.28 +0.0 1,986,523 + ABZR86_RS08900 0.28 -0.4 1,986,523 + ABZR86_RS08900 0.28 +0.4 1,986,524 - ABZR86_RS08900 0.28 +0.1 1,986,583 + ABZR86_RS08900 0.32 +0.4 1,986,583 + ABZR86_RS08900 0.32 +0.6 1,987,009 + ABZR86_RS08900 0.61 +0.2 1,987,010 - ABZR86_RS08900 0.61 -0.1 1,987,010 - ABZR86_RS08900 0.61 -0.2 1,987,030 + ABZR86_RS08900 0.63 +0.3 1,987,031 - ABZR86_RS08900 0.63 +0.4 1,987,101 - ABZR86_RS08900 0.68 -0.1 1,987,219 + ABZR86_RS08900 0.76 -0.8 1,987,219 + ABZR86_RS08900 0.76 -0.4 1,987,220 - ABZR86_RS08900 0.76 +0.1 1,987,355 - ABZR86_RS08900 0.85 +1.0 1,987,374 - ABZR86_RS08900 0.87 -0.6 1,987,565 - -0.8 1,987,567 + +0.7 1,987,568 - -0.2 1,987,693 + ABZR86_RS08905 0.17 -3.4 1,987,693 + ABZR86_RS08905 0.17 -1.0 1,987,693 + ABZR86_RS08905 0.17 -1.8 1,987,693 + ABZR86_RS08905 0.17 -2.0 1,987,693 + ABZR86_RS08905 0.17 -2.4 1,987,693 + ABZR86_RS08905 0.17 -2.0 1,987,694 - ABZR86_RS08905 0.17 -2.5 1,987,844 + ABZR86_RS08905 0.39 -4.5 1,987,844 + ABZR86_RS08905 0.39 -1.7 1,987,844 + ABZR86_RS08905 0.39 -3.5 1,987,844 + ABZR86_RS08905 0.39 -0.7 1,987,845 - ABZR86_RS08905 0.39 -2.0 1,987,845 - ABZR86_RS08905 0.39 -3.1 1,987,845 - ABZR86_RS08905 0.39 -2.1 1,987,845 - ABZR86_RS08905 0.39 -1.5 1,988,016 + ABZR86_RS08905 0.65 -3.4 1,988,129 - ABZR86_RS08905 0.82 -4.7 1,988,129 - ABZR86_RS08905 0.82 -3.9 1,988,129 - ABZR86_RS08905 0.82 -4.2 1,988,129 - ABZR86_RS08905 0.82 -3.1 1,988,129 - ABZR86_RS08905 0.82 -2.3 1,988,191 + -3.5 1,988,200 + -2.5 1,988,201 - -1.6 1,988,201 - -3.9 1,988,412 + ABZR86_RS08910 0.39 -1.3 1,988,412 + ABZR86_RS08910 0.39 -0.3 1,988,412 + ABZR86_RS08910 0.39 +0.5 1,988,413 - ABZR86_RS08910 0.39 +0.4 1,988,440 + ABZR86_RS08910 0.45 -0.2 1,988,440 + ABZR86_RS08910 0.45 -0.1 1,988,441 - ABZR86_RS08910 0.46 +0.1 1,988,545 - ABZR86_RS08910 0.70 -0.2 1,988,545 - ABZR86_RS08910 0.70 -0.1 1,988,545 - ABZR86_RS08910 0.70 +0.1
Or see this region's nucleotide sequence