Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1150

Experiment: MoYLS4 with nitrite 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1148 and DvMF_1149 are separated by 58 nucleotidesDvMF_1149 and DvMF_1150 overlap by 4 nucleotidesDvMF_1150 and DvMF_1151 are separated by 196 nucleotides DvMF_1148: DvMF_1148 - TrkA-N domain protein (RefSeq), at 1,408,259 to 1,410,103 _1148 DvMF_1149: DvMF_1149 - protein of unknown function DUF81 (RefSeq), at 1,410,162 to 1,411,055 _1149 DvMF_1150: DvMF_1150 - alkylhydroperoxidase like protein, AhpD family (RefSeq), at 1,411,052 to 1,411,489 _1150 DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609 _1151 Position (kb) 1411 1412Strain fitness (log2 ratio) -1 0 1at 1410.170 kb on + strandat 1410.219 kb on + strandat 1410.424 kb on + strand, within DvMF_1149at 1410.626 kb on - strand, within DvMF_1149at 1410.735 kb on + strand, within DvMF_1149at 1410.745 kb on + strand, within DvMF_1149at 1410.775 kb on + strand, within DvMF_1149at 1410.857 kb on - strand, within DvMF_1149at 1410.970 kb on - strandat 1411.009 kb on - strandat 1411.228 kb on + strand, within DvMF_1150at 1411.785 kb on + strand, within DvMF_1151at 1411.915 kb on - strand, within DvMF_1151at 1412.160 kb on - strand, within DvMF_1151at 1412.327 kb on - strand, within DvMF_1151at 1412.405 kb on + strand, within DvMF_1151at 1412.478 kb on + strand, within DvMF_1151

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 1.25 mg/ml
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1,410,170 + -0.1
1,410,219 + -0.5
1,410,424 + DvMF_1149 0.29 -0.3
1,410,626 - DvMF_1149 0.52 -0.2
1,410,735 + DvMF_1149 0.64 -0.4
1,410,745 + DvMF_1149 0.65 -0.4
1,410,775 + DvMF_1149 0.69 -0.4
1,410,857 - DvMF_1149 0.78 -0.1
1,410,970 - -0.5
1,411,009 - +0.5
1,411,228 + DvMF_1150 0.40 -1.4
1,411,785 + DvMF_1151 0.11 -0.4
1,411,915 - DvMF_1151 0.25 +0.0
1,412,160 - DvMF_1151 0.51 -0.8
1,412,327 - DvMF_1151 0.69 -0.4
1,412,405 + DvMF_1151 0.78 -0.3
1,412,478 + DvMF_1151 0.86 -0.3

Or see this region's nucleotide sequence