Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0788

Experiment: MoYLS4 with nitrite 1.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0787 and DvMF_0788 are separated by 341 nucleotidesDvMF_0788 and DvMF_0789 are separated by 278 nucleotides DvMF_0787: DvMF_0787 - (p)ppGpp synthetase I, SpoT/RelA (RefSeq), at 944,569 to 946,737 _0787 DvMF_0788: DvMF_0788 - extracellular solute-binding protein family 5 (RefSeq), at 947,079 to 948,809 _0788 DvMF_0789: DvMF_0789 - Non-specific serine/threonine protein kinase (RefSeq), at 949,088 to 952,297 _0789 Position (kb) 947 948 949Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 946.399 kb on - strand, within DvMF_0787at 946.530 kb on + strandat 946.584 kb on + strandat 946.621 kb on - strandat 947.009 kb on + strandat 947.084 kb on - strandat 947.108 kb on - strandat 947.394 kb on - strand, within DvMF_0788at 947.667 kb on - strand, within DvMF_0788at 947.832 kb on - strand, within DvMF_0788at 948.111 kb on + strand, within DvMF_0788at 948.234 kb on - strand, within DvMF_0788at 948.250 kb on - strand, within DvMF_0788at 948.311 kb on - strand, within DvMF_0788at 948.334 kb on - strand, within DvMF_0788at 948.409 kb on - strand, within DvMF_0788at 948.463 kb on + strand, within DvMF_0788at 948.465 kb on + strand, within DvMF_0788at 948.767 kb on - strandat 948.767 kb on - strandat 948.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with nitrite 1.25 mg/ml
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946,399 - DvMF_0787 0.84 -0.6
946,530 + -2.0
946,584 + -4.4
946,621 - -3.0
947,009 + -0.7
947,084 - +0.0
947,108 - +0.0
947,394 - DvMF_0788 0.18 -0.3
947,667 - DvMF_0788 0.34 -0.4
947,832 - DvMF_0788 0.44 -0.0
948,111 + DvMF_0788 0.60 -0.1
948,234 - DvMF_0788 0.67 +0.2
948,250 - DvMF_0788 0.68 -0.3
948,311 - DvMF_0788 0.71 -0.4
948,334 - DvMF_0788 0.73 +0.2
948,409 - DvMF_0788 0.77 -0.0
948,463 + DvMF_0788 0.80 -0.5
948,465 + DvMF_0788 0.80 -0.3
948,767 - -0.5
948,767 - +0.5
948,829 + -0.1

Or see this region's nucleotide sequence