Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3862 and Shewana3_3863 overlap by 4 nucleotides Shewana3_3863 and Shewana3_3864 are separated by 164 nucleotides Shewana3_3864 and Shewana3_3865 are separated by 74 nucleotides
Shewana3_3862: Shewana3_3862 - integrase catalytic subunit (RefSeq), at 4,638,394 to 4,640,247
_3862
Shewana3_3863: Shewana3_3863 - hypothetical protein (RefSeq), at 4,640,244 to 4,640,873
_3863
Shewana3_3864: Shewana3_3864 - hypothetical protein (RefSeq), at 4,641,038 to 4,641,688
_3864
Shewana3_3865: Shewana3_3865 - acyltransferase 3 (RefSeq), at 4,641,763 to 4,642,800
_3865
Position (kb) 4641
4642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4640.091 kb on - strand at 4640.094 kb on + strand at 4640.154 kb on + strand at 4640.155 kb on - strand at 4640.210 kb on + strand at 4640.210 kb on + strand at 4640.328 kb on + strand, within Shewana3_3863 at 4640.341 kb on - strand, within Shewana3_3863 at 4640.362 kb on - strand, within Shewana3_3863 at 4640.421 kb on - strand, within Shewana3_3863 at 4640.421 kb on - strand, within Shewana3_3863 at 4640.421 kb on - strand, within Shewana3_3863 at 4640.421 kb on - strand, within Shewana3_3863 at 4640.442 kb on - strand, within Shewana3_3863 at 4640.461 kb on - strand, within Shewana3_3863 at 4640.513 kb on - strand, within Shewana3_3863 at 4640.513 kb on - strand, within Shewana3_3863 at 4640.539 kb on + strand, within Shewana3_3863 at 4640.539 kb on + strand, within Shewana3_3863 at 4640.539 kb on + strand, within Shewana3_3863 at 4640.547 kb on - strand, within Shewana3_3863 at 4640.660 kb on + strand, within Shewana3_3863 at 4640.663 kb on + strand, within Shewana3_3863 at 4640.673 kb on + strand, within Shewana3_3863 at 4640.673 kb on + strand, within Shewana3_3863 at 4640.681 kb on - strand, within Shewana3_3863 at 4640.737 kb on - strand, within Shewana3_3863 at 4640.821 kb on + strand at 4641.013 kb on + strand at 4641.199 kb on + strand, within Shewana3_3864 at 4641.282 kb on - strand, within Shewana3_3864 at 4641.447 kb on - strand, within Shewana3_3864 at 4641.533 kb on + strand, within Shewana3_3864 at 4641.653 kb on - strand at 4641.655 kb on + strand at 4641.755 kb on - strand at 4641.907 kb on + strand, within Shewana3_3865 at 4641.912 kb on + strand, within Shewana3_3865 at 4641.912 kb on + strand, within Shewana3_3865 at 4641.915 kb on - strand, within Shewana3_3865 at 4642.054 kb on - strand, within Shewana3_3865 at 4642.058 kb on - strand, within Shewana3_3865 at 4642.126 kb on + strand, within Shewana3_3865 at 4642.269 kb on - strand, within Shewana3_3865 at 4642.325 kb on + strand, within Shewana3_3865 at 4642.346 kb on - strand, within Shewana3_3865 at 4642.505 kb on - strand, within Shewana3_3865 at 4642.505 kb on - strand, within Shewana3_3865 at 4642.548 kb on - strand, within Shewana3_3865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,640,091 - +0.2 4,640,094 + -2.9 4,640,154 + +0.6 4,640,155 - +0.4 4,640,210 + +0.3 4,640,210 + -0.8 4,640,328 + Shewana3_3863 0.13 +0.3 4,640,341 - Shewana3_3863 0.15 +0.8 4,640,362 - Shewana3_3863 0.19 +0.7 4,640,421 - Shewana3_3863 0.28 -1.2 4,640,421 - Shewana3_3863 0.28 +0.7 4,640,421 - Shewana3_3863 0.28 -1.9 4,640,421 - Shewana3_3863 0.28 -0.4 4,640,442 - Shewana3_3863 0.31 -1.0 4,640,461 - Shewana3_3863 0.34 +0.6 4,640,513 - Shewana3_3863 0.43 +0.6 4,640,513 - Shewana3_3863 0.43 -1.2 4,640,539 + Shewana3_3863 0.47 +0.7 4,640,539 + Shewana3_3863 0.47 -2.0 4,640,539 + Shewana3_3863 0.47 +0.4 4,640,547 - Shewana3_3863 0.48 +0.3 4,640,660 + Shewana3_3863 0.66 +0.1 4,640,663 + Shewana3_3863 0.67 -1.0 4,640,673 + Shewana3_3863 0.68 +1.1 4,640,673 + Shewana3_3863 0.68 +0.1 4,640,681 - Shewana3_3863 0.69 +2.3 4,640,737 - Shewana3_3863 0.78 +0.6 4,640,821 + +0.2 4,641,013 + +0.4 4,641,199 + Shewana3_3864 0.25 +1.7 4,641,282 - Shewana3_3864 0.37 +0.5 4,641,447 - Shewana3_3864 0.63 +0.6 4,641,533 + Shewana3_3864 0.76 +0.5 4,641,653 - +0.2 4,641,655 + +0.6 4,641,755 - +0.2 4,641,907 + Shewana3_3865 0.14 -1.0 4,641,912 + Shewana3_3865 0.14 +0.6 4,641,912 + Shewana3_3865 0.14 +0.2 4,641,915 - Shewana3_3865 0.15 +0.4 4,642,054 - Shewana3_3865 0.28 -0.7 4,642,058 - Shewana3_3865 0.28 -1.6 4,642,126 + Shewana3_3865 0.35 -0.6 4,642,269 - Shewana3_3865 0.49 +0.3 4,642,325 + Shewana3_3865 0.54 -0.0 4,642,346 - Shewana3_3865 0.56 -1.9 4,642,505 - Shewana3_3865 0.71 +0.6 4,642,505 - Shewana3_3865 0.71 +0.2 4,642,548 - Shewana3_3865 0.76 +0.9
Or see this region's nucleotide sequence