Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3785

Experiment: D-Glucosamine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (C)
4,543,867	-				+0.5
4,543,867	-				-0.3
4,543,899	-				+0.4
4,543,913	-				+1.0
4,543,914	-				-2.4
4,543,940	-				-2.2
4,544,019	-		Shewana3_3784	0.18	+0.6
4,544,038	+		Shewana3_3784	0.20	+0.4
4,544,063	+		Shewana3_3784	0.24	+0.6
4,544,117	-		Shewana3_3784	0.32	+0.7
4,544,164	+		Shewana3_3784	0.40	+0.5
4,544,164	+		Shewana3_3784	0.40	+0.6
4,544,172	-		Shewana3_3784	0.41	+0.4
4,544,172	-		Shewana3_3784	0.41	-3.1
4,544,189	+		Shewana3_3784	0.43	-0.0
4,544,191	+		Shewana3_3784	0.44	-1.9
4,544,199	-		Shewana3_3784	0.45	+0.1
4,544,199	-		Shewana3_3784	0.45	+0.3
4,544,208	+		Shewana3_3784	0.46	-2.7
4,544,243	+		Shewana3_3784	0.52	-0.4
4,544,243	+		Shewana3_3784	0.52	-1.8
4,544,244	+		Shewana3_3784	0.52	+0.6
4,544,264	+		Shewana3_3784	0.55	-1.7
4,544,279	+		Shewana3_3784	0.57	-1.6
4,544,279	+		Shewana3_3784	0.57	+0.1
4,544,279	+		Shewana3_3784	0.57	-2.7
4,544,279	+		Shewana3_3784	0.57	-1.5
4,544,279	+		Shewana3_3784	0.57	+0.6
4,544,279	+		Shewana3_3784	0.57	+0.3
4,544,279	+		Shewana3_3784	0.57	+1.8
4,544,287	-		Shewana3_3784	0.58	+0.2
4,544,287	-		Shewana3_3784	0.58	+0.5
4,544,287	-		Shewana3_3784	0.58	+0.5
4,544,287	-		Shewana3_3784	0.58	-1.9
4,544,287	-		Shewana3_3784	0.58	-0.2
4,544,314	+		Shewana3_3784	0.62	-1.0
4,544,363	+		Shewana3_3784	0.70	-0.1
4,544,371	-		Shewana3_3784	0.71	+0.3
4,544,371	-		Shewana3_3784	0.71	-0.1
4,544,371	-		Shewana3_3784	0.71	+0.7
4,544,373	-		Shewana3_3784	0.71	-0.3
4,544,377	-		Shewana3_3784	0.72	+0.2
4,544,493	+		Shewana3_3784	0.89	-1.7
4,544,493	+		Shewana3_3784	0.89	+0.7
4,544,493	+		Shewana3_3784	0.89	-0.3
4,544,493	+		Shewana3_3784	0.89	+1.0
4,544,493	+		Shewana3_3784	0.89	+0.0
4,544,493	+		Shewana3_3784	0.89	+0.4
4,544,493	+		Shewana3_3784	0.89	+1.0
4,544,501	-				+0.3
4,544,501	-				-0.5
4,544,501	-				-2.8
4,544,501	-				+0.8
4,544,501	-				+0.7
4,544,501	-				+1.6
4,544,501	-				+0.2
4,544,501	-				+1.3
4,544,501	-				-2.1
4,544,501	-				-1.6
4,544,501	-				+0.1
4,544,501	-				-2.1
4,544,501	-				+0.3
4,544,501	-				-1.4
4,544,501	-				+0.8
4,544,501	-				+0.3
4,544,502	+				-0.2
4,544,516	+				-2.3
4,544,517	-				+0.5
4,544,526	+				-0.2
4,544,591	-				+0.0
4,544,596	-				-0.7
4,544,604	-				+0.7
4,544,684	-				-2.0
4,544,686	+				-0.1
4,544,694	-				+0.5
4,544,694	-				-0.0
4,544,694	-				-1.2
4,544,733	-				+0.4
4,544,785	+				+0.3
4,544,793	-				-1.1
4,544,824	-				+1.3
4,544,838	-				-1.7
4,544,838	-				-0.7
4,544,899	+				+1.3
4,544,904	+				+0.6
4,544,904	+				+0.2
4,544,904	+				-0.5
4,544,904	+				-1.7
4,544,904	+				+0.2
4,544,912	-				-0.9
4,544,912	-				+0.6
4,544,926	+				+0.9
4,544,931	+				-0.1
4,544,944	+				-1.9
4,544,945	-				+0.7
4,545,023	-				+0.8
4,545,024	+				+0.5
4,545,158	-		Shewana3_3785	0.16	-0.1
4,545,227	-		Shewana3_3785	0.19	+1.1
4,545,229	-		Shewana3_3785	0.19	+1.1
4,545,237	-		Shewana3_3785	0.20	+0.5
4,545,248	+		Shewana3_3785	0.20	+1.0
4,545,284	-		Shewana3_3785	0.22	+0.3
4,545,284	-		Shewana3_3785	0.22	-2.0
4,545,284	-		Shewana3_3785	0.22	+1.2
4,545,309	+		Shewana3_3785	0.23	+0.5
4,545,309	+		Shewana3_3785	0.23	+0.7
4,545,312	-		Shewana3_3785	0.23	-0.5
4,545,317	-		Shewana3_3785	0.24	-2.8
4,545,317	-		Shewana3_3785	0.24	+0.3
4,545,333	-		Shewana3_3785	0.24	-1.5
4,545,342	+		Shewana3_3785	0.25	+0.3
4,545,345	-		Shewana3_3785	0.25	+0.4
4,545,351	-		Shewana3_3785	0.25	+0.8
4,545,363	-		Shewana3_3785	0.26	-0.0
4,545,381	+		Shewana3_3785	0.27	+0.2
4,545,417	+		Shewana3_3785	0.28	-0.7
4,545,479	-		Shewana3_3785	0.31	+1.3
4,545,531	-		Shewana3_3785	0.34	-3.8
4,545,557	-		Shewana3_3785	0.35	+0.8
4,545,579	-		Shewana3_3785	0.36	-0.3
4,545,579	-		Shewana3_3785	0.36	+1.2
4,545,631	-		Shewana3_3785	0.39	-1.2
4,545,697	-		Shewana3_3785	0.42	+0.0
4,545,737	-		Shewana3_3785	0.44	-0.1
4,545,786	+		Shewana3_3785	0.46	-1.6
4,545,789	-		Shewana3_3785	0.46	-2.2
4,545,794	-		Shewana3_3785	0.46	-1.6
4,545,803	+		Shewana3_3785	0.47	+1.1
4,545,923	+		Shewana3_3785	0.53	-1.3
4,545,927	-		Shewana3_3785	0.53	-1.1
4,545,999	+		Shewana3_3785	0.56	-4.0
4,546,091	-		Shewana3_3785	0.61	-2.1
4,546,130	+		Shewana3_3785	0.63	-1.6
4,546,130	+		Shewana3_3785	0.63	+0.1
4,546,132	+		Shewana3_3785	0.63	+0.3
4,546,150	-		Shewana3_3785	0.63	+1.2
4,546,303	-		Shewana3_3785	0.71	-1.5
4,546,303	-		Shewana3_3785	0.71	-2.1
4,546,311	-		Shewana3_3785	0.71	-1.6
4,546,378	+		Shewana3_3785	0.74	+1.1
4,546,386	-		Shewana3_3785	0.75	+0.4
4,546,386	-		Shewana3_3785	0.75	-0.2
4,546,386	-		Shewana3_3785	0.75	-1.1
4,546,404	+		Shewana3_3785	0.76	+0.9
4,546,458	+		Shewana3_3785	0.78	+0.7
4,546,466	-		Shewana3_3785	0.79	-0.3
4,546,522	+		Shewana3_3785	0.81	-1.0
4,546,525	-		Shewana3_3785	0.81	+0.7
4,546,527	+		Shewana3_3785	0.81	+0.7
4,546,527	+		Shewana3_3785	0.81	+0.8
4,546,527	+		Shewana3_3785	0.81	+0.9
4,546,527	+		Shewana3_3785	0.81	-2.4
4,546,527	+		Shewana3_3785	0.81	+0.0
4,546,527	+		Shewana3_3785	0.81	+0.2
4,546,527	+		Shewana3_3785	0.81	-1.6
4,546,527	+		Shewana3_3785	0.81	-1.8
4,546,527	+		Shewana3_3785	0.81	-1.9
4,546,527	+		Shewana3_3785	0.81	+0.6
4,546,527	+		Shewana3_3785	0.81	+0.8
4,546,527	+		Shewana3_3785	0.81	-1.5
4,546,530	+		Shewana3_3785	0.82	-0.1
4,546,530	-		Shewana3_3785	0.82	+2.0
4,546,535	-		Shewana3_3785	0.82	-0.2
4,546,535	-		Shewana3_3785	0.82	+0.7
4,546,535	-		Shewana3_3785	0.82	+0.7
4,546,535	-		Shewana3_3785	0.82	+1.0
4,546,535	-		Shewana3_3785	0.82	+0.7
4,546,535	-		Shewana3_3785	0.82	+0.8
4,546,535	-		Shewana3_3785	0.82	+0.5
4,546,535	-		Shewana3_3785	0.82	+0.8
4,546,535	-		Shewana3_3785	0.82	+2.0
4,546,535	-		Shewana3_3785	0.82	-0.2
4,546,535	-		Shewana3_3785	0.82	-0.5
4,546,535	-		Shewana3_3785	0.82	+1.0
4,546,535	-		Shewana3_3785	0.82	+0.3
4,546,535	-		Shewana3_3785	0.82	+0.7
4,546,535	-		Shewana3_3785	0.82	-0.6
4,546,535	-		Shewana3_3785	0.82	+0.2
4,546,535	-		Shewana3_3785	0.82	-0.3
4,546,762	+				-2.4
4,546,798	+				+0.7
4,546,808	-				+0.5
4,546,848	+				-1.6
4,546,848	+				-1.5
4,546,856	-				+1.0
4,546,858	+				-0.8
4,546,863	+				+0.9
4,546,872	-				+0.4
4,546,874	+				+2.0
4,546,874	+				+0.4
4,546,874	+				-1.0
4,546,874	+				-2.6
4,546,874	+				+0.7
4,546,874	+				-0.1
4,546,877	-				+0.3
4,546,882	-				+0.2
4,546,882	-				-1.3
4,546,882	-				+1.8
4,546,882	-				-2.2
4,546,882	-				+0.4
4,546,882	-				-0.5
4,546,899	-				+0.5
4,546,902	+				-1.0
4,546,903	+				+0.4
4,546,911	-				-1.4
4,546,915	-				-2.3
4,546,916	-				+0.4
4,546,922	-				-1.8
4,546,986	+				+0.7
4,546,994	-		Shewana3_3786	0.11	+0.6
4,546,994	-		Shewana3_3786	0.11	-0.7
4,547,025	+		Shewana3_3786	0.15	-1.7
4,547,056	+		Shewana3_3786	0.19	+0.6
4,547,056	+		Shewana3_3786	0.19	+0.1
4,547,061	+		Shewana3_3786	0.20	-0.4
4,547,066	+		Shewana3_3786	0.20	-0.4
4,547,066	+		Shewana3_3786	0.20	-2.3
4,547,066	+		Shewana3_3786	0.20	-0.0
4,547,074	-		Shewana3_3786	0.21	-3.0
4,547,077	+		Shewana3_3786	0.22	-1.0
4,547,098	-		Shewana3_3786	0.25	+0.2
4,547,108	-		Shewana3_3786	0.26	+0.0
4,547,182	+		Shewana3_3786	0.36	+0.4
4,547,206	+		Shewana3_3786	0.39	-1.4
4,547,281	+		Shewana3_3786	0.50	+1.2
4,547,286	+		Shewana3_3786	0.50	-0.2
4,547,291	+		Shewana3_3786	0.51	-1.3
4,547,291	+		Shewana3_3786	0.51	-0.2
4,547,291	+		Shewana3_3786	0.51	-3.9
4,547,291	+		Shewana3_3786	0.51	+0.9
4,547,294	-		Shewana3_3786	0.52	+0.5
4,547,299	-		Shewana3_3786	0.52	+0.2
4,547,299	-		Shewana3_3786	0.52	+0.3
4,547,299	-		Shewana3_3786	0.52	+1.6
4,547,299	-		Shewana3_3786	0.52	+0.6
4,547,352	+		Shewana3_3786	0.59	+0.6
4,547,375	+		Shewana3_3786	0.63	-0.2
4,547,376	-		Shewana3_3786	0.63	+1.8
4,547,376	-		Shewana3_3786	0.63	-1.3
4,547,390	+		Shewana3_3786	0.65	+1.3
4,547,390	+		Shewana3_3786	0.65	+0.2
4,547,408	+		Shewana3_3786	0.67	-0.7
4,547,408	+		Shewana3_3786	0.67	-0.2
4,547,408	+		Shewana3_3786	0.67	-0.2
4,547,408	+		Shewana3_3786	0.67	-1.2
4,547,408	+		Shewana3_3786	0.67	+0.1
4,547,416	-		Shewana3_3786	0.68	+0.0
4,547,416	-		Shewana3_3786	0.68	+1.1
4,547,455	-		Shewana3_3786	0.73	+0.1
4,547,483	+		Shewana3_3786	0.77	-2.6
4,547,512	+		Shewana3_3786	0.81	-1.5
4,547,512	+		Shewana3_3786	0.81	+0.6
4,547,546	+		Shewana3_3786	0.86	-1.5
4,547,546	+		Shewana3_3786	0.86	+0.5
4,547,554	-		Shewana3_3786	0.87	+1.0
4,547,587	+				-1.4
4,547,643	+				-2.0
4,547,651	-				+0.1
4,547,652	+				+0.2
4,547,655	+				-2.2
4,547,655	+				+0.6
4,547,655	+				-2.4
4,547,663	-				+0.8
4,547,663	-				+0.8
4,547,724	+				+0.2
4,547,724	+				-2.6
4,547,733	-				+0.7
4,547,767	+				+0.6
4,547,768	+				+0.3
4,547,775	-				+0.5
4,547,775	-				+0.7
4,547,779	+				+0.3
4,547,779	+				+0.6
4,547,779	+				-1.7
4,547,779	+				-0.2
4,547,779	+				+0.2
4,547,779	+				+1.6
4,547,779	+				-2.4
4,547,779	+				-3.5
4,547,779	+				-3.0
4,547,779	+				+0.2
4,547,787	-				-0.1
4,547,787	-				+0.9
4,547,787	-				+0.5
4,547,787	-				+0.4
4,547,787	-				+0.3
4,547,787	-				+0.5
4,547,787	-				-1.8
4,547,787	-				+0.7
4,547,787	-				+0.8
4,547,797	-				-0.6
4,547,844	-		Shewana3_3787	0.12	-1.3
4,547,860	+		Shewana3_3787	0.13	+1.3
4,547,874	+		Shewana3_3787	0.14	-2.0
4,547,874	+		Shewana3_3787	0.14	+0.4
4,547,879	+		Shewana3_3787	0.15	-0.4
4,547,882	-		Shewana3_3787	0.15	+0.5