Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3705 and Shewana3_3706 are separated by 40 nucleotides Shewana3_3706 and Shewana3_3707 are separated by 31 nucleotides Shewana3_3707 and Shewana3_3708 overlap by 4 nucleotides
Shewana3_3705: Shewana3_3705 - C factor cell-cell signaling protein (RefSeq), at 4,447,529 to 4,448,239
_3705
Shewana3_3706: Shewana3_3706 - hypothetical protein (RefSeq), at 4,448,280 to 4,448,756
_3706
Shewana3_3707: Shewana3_3707 - response regulator receiver protein (RefSeq), at 4,448,788 to 4,449,339
_3707
Shewana3_3708: Shewana3_3708 - ATPase domain-containing protein (RefSeq), at 4,449,336 to 4,450,625
_3708
Position (kb) 4448
4449
4450 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4447.873 kb on + strand, within Shewana3_3705 at 4447.979 kb on - strand, within Shewana3_3705 at 4448.174 kb on - strand at 4448.276 kb on + strand at 4448.567 kb on - strand, within Shewana3_3706 at 4448.732 kb on + strand at 4448.758 kb on + strand at 4448.934 kb on + strand, within Shewana3_3707 at 4448.942 kb on - strand, within Shewana3_3707 at 4448.942 kb on - strand, within Shewana3_3707 at 4449.212 kb on - strand, within Shewana3_3707 at 4449.429 kb on + strand at 4449.491 kb on - strand, within Shewana3_3708 at 4449.491 kb on - strand, within Shewana3_3708 at 4449.516 kb on + strand, within Shewana3_3708 at 4449.617 kb on - strand, within Shewana3_3708 at 4449.678 kb on + strand, within Shewana3_3708 at 4449.715 kb on + strand, within Shewana3_3708 at 4449.753 kb on - strand, within Shewana3_3708 at 4449.891 kb on + strand, within Shewana3_3708 at 4449.899 kb on - strand, within Shewana3_3708 at 4450.055 kb on - strand, within Shewana3_3708 at 4450.112 kb on + strand, within Shewana3_3708 at 4450.125 kb on - strand, within Shewana3_3708 at 4450.232 kb on + strand, within Shewana3_3708 at 4450.240 kb on - strand, within Shewana3_3708
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,447,873 + Shewana3_3705 0.48 -0.6 4,447,979 - Shewana3_3705 0.63 +0.6 4,448,174 - +0.1 4,448,276 + +0.9 4,448,567 - Shewana3_3706 0.60 +0.4 4,448,732 + -0.4 4,448,758 + +0.1 4,448,934 + Shewana3_3707 0.26 -0.2 4,448,942 - Shewana3_3707 0.28 -2.2 4,448,942 - Shewana3_3707 0.28 +0.4 4,449,212 - Shewana3_3707 0.77 -2.1 4,449,429 + +0.6 4,449,491 - Shewana3_3708 0.12 -0.6 4,449,491 - Shewana3_3708 0.12 -2.8 4,449,516 + Shewana3_3708 0.14 -0.1 4,449,617 - Shewana3_3708 0.22 +0.2 4,449,678 + Shewana3_3708 0.27 +0.1 4,449,715 + Shewana3_3708 0.29 +0.2 4,449,753 - Shewana3_3708 0.32 -1.3 4,449,891 + Shewana3_3708 0.43 -0.3 4,449,899 - Shewana3_3708 0.44 -2.2 4,450,055 - Shewana3_3708 0.56 -1.2 4,450,112 + Shewana3_3708 0.60 -0.1 4,450,125 - Shewana3_3708 0.61 -0.7 4,450,232 + Shewana3_3708 0.69 -0.4 4,450,240 - Shewana3_3708 0.70 +0.8
Or see this region's nucleotide sequence