Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3644 and Shewana3_3645 are separated by 135 nucleotides Shewana3_3645 and Shewana3_3646 are separated by 2 nucleotides Shewana3_3646 and Shewana3_3647 overlap by 1 nucleotides
Shewana3_3644: Shewana3_3644 - ribonuclease G (RefSeq), at 4,379,247 to 4,380,755
_3644
Shewana3_3645: Shewana3_3645 - maf protein (RefSeq), at 4,380,891 to 4,381,475
_3645
Shewana3_3646: Shewana3_3646 - rod shape-determining protein MreD (RefSeq), at 4,381,478 to 4,381,966
_3646
Shewana3_3647: Shewana3_3647 - rod shape-determining protein MreC (RefSeq), at 4,381,966 to 4,383,027
_3647
Position (kb)
4380
4381
4382 Strain fitness (log2 ratio)
-2
-1
0
1 at 4380.078 kb on - strand, within Shewana3_3644 at 4380.128 kb on + strand, within Shewana3_3644 at 4380.136 kb on - strand, within Shewana3_3644 at 4380.303 kb on + strand, within Shewana3_3644 at 4380.671 kb on - strand at 4380.885 kb on - strand at 4381.131 kb on - strand, within Shewana3_3645 at 4381.161 kb on - strand, within Shewana3_3645 at 4381.247 kb on + strand, within Shewana3_3645 at 4381.328 kb on + strand, within Shewana3_3645 at 4381.328 kb on + strand, within Shewana3_3645 at 4381.473 kb on - strand at 4382.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,380,078 - Shewana3_3644 0.55 -1.5 4,380,128 + Shewana3_3644 0.58 -0.6 4,380,136 - Shewana3_3644 0.59 -1.8 4,380,303 + Shewana3_3644 0.70 -1.0 4,380,671 - +0.1 4,380,885 - -1.5 4,381,131 - Shewana3_3645 0.41 -0.8 4,381,161 - Shewana3_3645 0.46 +0.1 4,381,247 + Shewana3_3645 0.61 -2.1 4,381,328 + Shewana3_3645 0.75 +0.2 4,381,328 + Shewana3_3645 0.75 -0.8 4,381,473 - +0.5 4,382,020 - +1.1
Or see this region's nucleotide sequence