Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3466 and Shewana3_3467 are separated by 139 nucleotides Shewana3_3467 and Shewana3_3468 are separated by 9 nucleotides Shewana3_3468 and Shewana3_3469 are separated by 136 nucleotides
Shewana3_3466: Shewana3_3466 - short-chain dehydrogenase/reductase SDR (RefSeq), at 4,156,829 to 4,157,707
_3466
Shewana3_3467: Shewana3_3467 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 4,157,847 to 4,158,554
_3467
Shewana3_3468: Shewana3_3468 - butyryl-CoA:acetate CoA transferase (RefSeq), at 4,158,564 to 4,159,226
_3468
Shewana3_3469: Shewana3_3469 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase (RefSeq), at 4,159,363 to 4,161,633
_3469
Position (kb) 4158
4159
4160 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4157.598 kb on - strand, within Shewana3_3466 at 4157.603 kb on - strand, within Shewana3_3466 at 4157.674 kb on - strand at 4157.680 kb on + strand at 4157.680 kb on + strand at 4157.698 kb on - strand at 4157.698 kb on - strand at 4157.770 kb on + strand at 4157.770 kb on + strand at 4157.778 kb on - strand at 4157.812 kb on + strand at 4157.830 kb on + strand at 4157.867 kb on + strand at 4157.937 kb on - strand, within Shewana3_3467 at 4157.937 kb on - strand, within Shewana3_3467 at 4158.087 kb on - strand, within Shewana3_3467 at 4158.260 kb on + strand, within Shewana3_3467 at 4158.503 kb on - strand at 4158.505 kb on + strand at 4158.836 kb on + strand, within Shewana3_3468 at 4158.886 kb on + strand, within Shewana3_3468 at 4158.901 kb on - strand, within Shewana3_3468 at 4158.929 kb on + strand, within Shewana3_3468 at 4158.987 kb on + strand, within Shewana3_3468 at 4159.000 kb on + strand, within Shewana3_3468 at 4159.000 kb on + strand, within Shewana3_3468 at 4159.083 kb on + strand, within Shewana3_3468 at 4159.124 kb on + strand, within Shewana3_3468 at 4159.131 kb on + strand, within Shewana3_3468 at 4159.360 kb on + strand at 4159.360 kb on + strand at 4159.418 kb on + strand at 4159.609 kb on + strand, within Shewana3_3469 at 4159.617 kb on - strand, within Shewana3_3469 at 4159.990 kb on - strand, within Shewana3_3469 at 4159.990 kb on - strand, within Shewana3_3469 at 4160.040 kb on + strand, within Shewana3_3469 at 4160.048 kb on - strand, within Shewana3_3469 at 4160.050 kb on + strand, within Shewana3_3469 at 4160.076 kb on + strand, within Shewana3_3469 at 4160.076 kb on + strand, within Shewana3_3469 at 4160.084 kb on - strand, within Shewana3_3469 at 4160.084 kb on - strand, within Shewana3_3469 at 4160.132 kb on + strand, within Shewana3_3469 at 4160.132 kb on + strand, within Shewana3_3469 at 4160.140 kb on - strand, within Shewana3_3469 at 4160.195 kb on - strand, within Shewana3_3469
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,157,598 - Shewana3_3466 0.87 -2.1 4,157,603 - Shewana3_3466 0.88 -0.0 4,157,674 - +0.5 4,157,680 + -1.4 4,157,680 + +0.2 4,157,698 - -1.9 4,157,698 - +0.5 4,157,770 + +0.3 4,157,770 + +0.2 4,157,778 - -1.7 4,157,812 + -2.2 4,157,830 + +0.0 4,157,867 + +0.3 4,157,937 - Shewana3_3467 0.13 +0.5 4,157,937 - Shewana3_3467 0.13 +0.6 4,158,087 - Shewana3_3467 0.34 -0.6 4,158,260 + Shewana3_3467 0.58 +0.2 4,158,503 - -1.5 4,158,505 + +0.4 4,158,836 + Shewana3_3468 0.41 -1.3 4,158,886 + Shewana3_3468 0.49 -2.6 4,158,901 - Shewana3_3468 0.51 -0.0 4,158,929 + Shewana3_3468 0.55 -0.0 4,158,987 + Shewana3_3468 0.64 +0.3 4,159,000 + Shewana3_3468 0.66 -0.9 4,159,000 + Shewana3_3468 0.66 -0.4 4,159,083 + Shewana3_3468 0.78 -1.5 4,159,124 + Shewana3_3468 0.84 -0.3 4,159,131 + Shewana3_3468 0.86 -2.1 4,159,360 + +0.4 4,159,360 + +0.5 4,159,418 + +0.3 4,159,609 + Shewana3_3469 0.11 -0.4 4,159,617 - Shewana3_3469 0.11 +0.3 4,159,990 - Shewana3_3469 0.28 +0.4 4,159,990 - Shewana3_3469 0.28 +0.5 4,160,040 + Shewana3_3469 0.30 +0.6 4,160,048 - Shewana3_3469 0.30 +0.7 4,160,050 + Shewana3_3469 0.30 -3.2 4,160,076 + Shewana3_3469 0.31 +1.1 4,160,076 + Shewana3_3469 0.31 +1.3 4,160,084 - Shewana3_3469 0.32 +0.6 4,160,084 - Shewana3_3469 0.32 -2.3 4,160,132 + Shewana3_3469 0.34 +0.4 4,160,132 + Shewana3_3469 0.34 -1.3 4,160,140 - Shewana3_3469 0.34 +0.6 4,160,195 - Shewana3_3469 0.37 +0.1
Or see this region's nucleotide sequence