Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3382

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3380 and Shewana3_3381 are separated by 175 nucleotidesShewana3_3381 and Shewana3_3382 are separated by 200 nucleotidesShewana3_3382 and Shewana3_3383 are separated by 57 nucleotides Shewana3_3380: Shewana3_3380 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,051,539 to 4,051,961 _3380 Shewana3_3381: Shewana3_3381 - hypothetical protein (RefSeq), at 4,052,137 to 4,052,664 _3381 Shewana3_3382: Shewana3_3382 - hypothetical protein (RefSeq), at 4,052,865 to 4,053,155 _3382 Shewana3_3383: Shewana3_3383 - TonB-dependent receptor, plug (RefSeq), at 4,053,213 to 4,055,489 _3383 Position (kb) 4052 4053 4054Strain fitness (log2 ratio) -3 -2 -1 0 1at 4051.873 kb on + strand, within Shewana3_3380at 4051.885 kb on + strand, within Shewana3_3380at 4051.885 kb on + strand, within Shewana3_3380at 4051.900 kb on - strand, within Shewana3_3380at 4052.363 kb on - strand, within Shewana3_3381at 4052.912 kb on + strand, within Shewana3_3382at 4052.961 kb on + strand, within Shewana3_3382at 4053.000 kb on - strand, within Shewana3_3382at 4053.046 kb on - strand, within Shewana3_3382at 4053.135 kb on - strandat 4053.217 kb on + strandat 4053.227 kb on + strandat 4053.259 kb on + strandat 4053.718 kb on + strand, within Shewana3_3383at 4053.726 kb on - strand, within Shewana3_3383at 4053.788 kb on - strand, within Shewana3_3383at 4053.939 kb on + strand, within Shewana3_3383at 4053.947 kb on - strand, within Shewana3_3383at 4053.947 kb on - strand, within Shewana3_3383at 4053.999 kb on - strand, within Shewana3_3383at 4054.134 kb on + strand, within Shewana3_3383at 4054.151 kb on + strand, within Shewana3_3383

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
4,051,873 + Shewana3_3380 0.79 -2.8
4,051,885 + Shewana3_3380 0.82 -1.8
4,051,885 + Shewana3_3380 0.82 -2.0
4,051,900 - Shewana3_3380 0.85 +0.5
4,052,363 - Shewana3_3381 0.43 +0.3
4,052,912 + Shewana3_3382 0.16 -0.3
4,052,961 + Shewana3_3382 0.33 -0.4
4,053,000 - Shewana3_3382 0.46 -2.9
4,053,046 - Shewana3_3382 0.62 -1.5
4,053,135 - +0.7
4,053,217 + -0.2
4,053,227 + -1.6
4,053,259 + -0.8
4,053,718 + Shewana3_3383 0.22 +0.4
4,053,726 - Shewana3_3383 0.23 +0.4
4,053,788 - Shewana3_3383 0.25 +0.6
4,053,939 + Shewana3_3383 0.32 +0.3
4,053,947 - Shewana3_3383 0.32 -0.2
4,053,947 - Shewana3_3383 0.32 +0.5
4,053,999 - Shewana3_3383 0.35 +0.6
4,054,134 + Shewana3_3383 0.40 -1.3
4,054,151 + Shewana3_3383 0.41 +0.4

Or see this region's nucleotide sequence