Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3380 and Shewana3_3381 are separated by 175 nucleotides Shewana3_3381 and Shewana3_3382 are separated by 200 nucleotides Shewana3_3382 and Shewana3_3383 are separated by 57 nucleotides
Shewana3_3380: Shewana3_3380 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 4,051,539 to 4,051,961
_3380
Shewana3_3381: Shewana3_3381 - hypothetical protein (RefSeq), at 4,052,137 to 4,052,664
_3381
Shewana3_3382: Shewana3_3382 - hypothetical protein (RefSeq), at 4,052,865 to 4,053,155
_3382
Shewana3_3383: Shewana3_3383 - TonB-dependent receptor, plug (RefSeq), at 4,053,213 to 4,055,489
_3383
Position (kb)
4052
4053
4054 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4051.873 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.885 kb on + strand, within Shewana3_3380 at 4051.900 kb on - strand, within Shewana3_3380 at 4052.363 kb on - strand, within Shewana3_3381 at 4052.912 kb on + strand, within Shewana3_3382 at 4052.961 kb on + strand, within Shewana3_3382 at 4053.000 kb on - strand, within Shewana3_3382 at 4053.046 kb on - strand, within Shewana3_3382 at 4053.135 kb on - strand at 4053.217 kb on + strand at 4053.227 kb on + strand at 4053.259 kb on + strand at 4053.718 kb on + strand, within Shewana3_3383 at 4053.726 kb on - strand, within Shewana3_3383 at 4053.788 kb on - strand, within Shewana3_3383 at 4053.939 kb on + strand, within Shewana3_3383 at 4053.947 kb on - strand, within Shewana3_3383 at 4053.947 kb on - strand, within Shewana3_3383 at 4053.999 kb on - strand, within Shewana3_3383 at 4054.134 kb on + strand, within Shewana3_3383 at 4054.151 kb on + strand, within Shewana3_3383
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,051,873 + Shewana3_3380 0.79 -2.8 4,051,885 + Shewana3_3380 0.82 -1.8 4,051,885 + Shewana3_3380 0.82 -2.0 4,051,900 - Shewana3_3380 0.85 +0.5 4,052,363 - Shewana3_3381 0.43 +0.3 4,052,912 + Shewana3_3382 0.16 -0.3 4,052,961 + Shewana3_3382 0.33 -0.4 4,053,000 - Shewana3_3382 0.46 -2.9 4,053,046 - Shewana3_3382 0.62 -1.5 4,053,135 - +0.7 4,053,217 + -0.2 4,053,227 + -1.6 4,053,259 + -0.8 4,053,718 + Shewana3_3383 0.22 +0.4 4,053,726 - Shewana3_3383 0.23 +0.4 4,053,788 - Shewana3_3383 0.25 +0.6 4,053,939 + Shewana3_3383 0.32 +0.3 4,053,947 - Shewana3_3383 0.32 -0.2 4,053,947 - Shewana3_3383 0.32 +0.5 4,053,999 - Shewana3_3383 0.35 +0.6 4,054,134 + Shewana3_3383 0.40 -1.3 4,054,151 + Shewana3_3383 0.41 +0.4
Or see this region's nucleotide sequence