Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3266

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3264 and Shewana3_3265 are separated by 154 nucleotidesShewana3_3265 and Shewana3_3266 are separated by 256 nucleotidesShewana3_3266 and Shewana3_3267 are separated by 835 nucleotides Shewana3_3264: Shewana3_3264 - hypothetical protein (RefSeq), at 3,906,464 to 3,907,510 _3264 Shewana3_3265: Shewana3_3265 - hypothetical protein (RefSeq), at 3,907,665 to 3,908,021 _3265 Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571 _3266 Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631 _3267 Position (kb) 3908 3909Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3907.552 kb on + strandat 3907.689 kb on + strandat 3907.695 kb on + strandat 3907.728 kb on - strand, within Shewana3_3265at 3907.792 kb on + strand, within Shewana3_3265at 3907.933 kb on - strand, within Shewana3_3265at 3907.948 kb on + strand, within Shewana3_3265at 3908.006 kb on - strandat 3908.087 kb on + strandat 3908.087 kb on + strandat 3908.171 kb on + strandat 3908.381 kb on - strand, within Shewana3_3266at 3908.391 kb on - strand, within Shewana3_3266at 3908.391 kb on - strand, within Shewana3_3266at 3908.498 kb on + strand, within Shewana3_3266at 3908.608 kb on - strandat 3908.652 kb on - strandat 3908.655 kb on + strandat 3908.722 kb on - strandat 3908.850 kb on - strandat 3908.893 kb on - strandat 3909.062 kb on + strandat 3909.062 kb on + strandat 3909.174 kb on - strandat 3909.198 kb on + strandat 3909.307 kb on + strandat 3909.343 kb on + strandat 3909.414 kb on + strandat 3909.414 kb on + strandat 3909.494 kb on - strand, within Shewana3_3267

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,907,552 + -0.2
3,907,689 + -1.7
3,907,695 + +0.0
3,907,728 - Shewana3_3265 0.18 -1.7
3,907,792 + Shewana3_3265 0.36 +0.4
3,907,933 - Shewana3_3265 0.75 -0.0
3,907,948 + Shewana3_3265 0.79 +1.4
3,908,006 - +0.0
3,908,087 + +0.7
3,908,087 + -0.2
3,908,171 + -3.5
3,908,381 - Shewana3_3266 0.35 -0.3
3,908,391 - Shewana3_3266 0.38 +0.7
3,908,391 - Shewana3_3266 0.38 +0.1
3,908,498 + Shewana3_3266 0.75 +2.0
3,908,608 - +0.4
3,908,652 - -2.0
3,908,655 + +0.0
3,908,722 - -0.6
3,908,850 - +0.3
3,908,893 - +0.4
3,909,062 + +0.8
3,909,062 + -2.3
3,909,174 - +0.1
3,909,198 + -1.6
3,909,307 + +0.5
3,909,343 + +1.0
3,909,414 + -2.4
3,909,414 + +0.3
3,909,494 - Shewana3_3267 0.39 +0.6

Or see this region's nucleotide sequence