Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3264 and Shewana3_3265 are separated by 154 nucleotides Shewana3_3265 and Shewana3_3266 are separated by 256 nucleotides Shewana3_3266 and Shewana3_3267 are separated by 835 nucleotides
Shewana3_3264: Shewana3_3264 - hypothetical protein (RefSeq), at 3,906,464 to 3,907,510
_3264
Shewana3_3265: Shewana3_3265 - hypothetical protein (RefSeq), at 3,907,665 to 3,908,021
_3265
Shewana3_3266: Shewana3_3266 - hypothetical protein (RefSeq), at 3,908,278 to 3,908,571
_3266
Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631
_3267
Position (kb)
3908
3909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3907.552 kb on + strand at 3907.689 kb on + strand at 3907.695 kb on + strand at 3907.728 kb on - strand, within Shewana3_3265 at 3907.792 kb on + strand, within Shewana3_3265 at 3907.933 kb on - strand, within Shewana3_3265 at 3907.948 kb on + strand, within Shewana3_3265 at 3908.006 kb on - strand at 3908.087 kb on + strand at 3908.087 kb on + strand at 3908.171 kb on + strand at 3908.381 kb on - strand, within Shewana3_3266 at 3908.391 kb on - strand, within Shewana3_3266 at 3908.391 kb on - strand, within Shewana3_3266 at 3908.498 kb on + strand, within Shewana3_3266 at 3908.608 kb on - strand at 3908.652 kb on - strand at 3908.655 kb on + strand at 3908.722 kb on - strand at 3908.850 kb on - strand at 3908.893 kb on - strand at 3909.062 kb on + strand at 3909.062 kb on + strand at 3909.174 kb on - strand at 3909.198 kb on + strand at 3909.307 kb on + strand at 3909.343 kb on + strand at 3909.414 kb on + strand at 3909.414 kb on + strand at 3909.494 kb on - strand, within Shewana3_3267
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,907,552 + -0.2 3,907,689 + -1.7 3,907,695 + +0.0 3,907,728 - Shewana3_3265 0.18 -1.7 3,907,792 + Shewana3_3265 0.36 +0.4 3,907,933 - Shewana3_3265 0.75 -0.0 3,907,948 + Shewana3_3265 0.79 +1.4 3,908,006 - +0.0 3,908,087 + +0.7 3,908,087 + -0.2 3,908,171 + -3.5 3,908,381 - Shewana3_3266 0.35 -0.3 3,908,391 - Shewana3_3266 0.38 +0.7 3,908,391 - Shewana3_3266 0.38 +0.1 3,908,498 + Shewana3_3266 0.75 +2.0 3,908,608 - +0.4 3,908,652 - -2.0 3,908,655 + +0.0 3,908,722 - -0.6 3,908,850 - +0.3 3,908,893 - +0.4 3,909,062 + +0.8 3,909,062 + -2.3 3,909,174 - +0.1 3,909,198 + -1.6 3,909,307 + +0.5 3,909,343 + +1.0 3,909,414 + -2.4 3,909,414 + +0.3 3,909,494 - Shewana3_3267 0.39 +0.6
Or see this region's nucleotide sequence