Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2991 and Shewana3_2992 are separated by 128 nucleotides Shewana3_2992 and Shewana3_2993 are separated by 118 nucleotides Shewana3_2993 and Shewana3_2994 are separated by 99 nucleotides Shewana3_2994 and Shewana3_2995 are separated by 390 nucleotides
Shewana3_2991: Shewana3_2991 - redoxin domain-containing protein (RefSeq), at 3,597,334 to 3,597,981
_2991
Shewana3_2992: Shewana3_2992 - hypothetical protein (RefSeq), at 3,598,110 to 3,598,745
_2992
Shewana3_2993: Shewana3_2993 - amino acid ABC transporter periplasmic protein (RefSeq), at 3,598,864 to 3,599,613
_2993
Shewana3_2994: Shewana3_2994 - hypothetical protein (RefSeq), at 3,599,713 to 3,600,021
_2994
Shewana3_2995: Shewana3_2995 - PfpI family intracellular peptidase (RefSeq), at 3,600,412 to 3,600,972
_2995
Position (kb)
3598
3599
3600 Strain fitness (log2 ratio)
-2
-1
0
1 at 3597.929 kb on - strand at 3597.951 kb on - strand at 3598.401 kb on + strand, within Shewana3_2992 at 3598.403 kb on + strand, within Shewana3_2992 at 3598.590 kb on - strand, within Shewana3_2992 at 3598.628 kb on + strand, within Shewana3_2992 at 3598.674 kb on + strand, within Shewana3_2992 at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3598.682 kb on + strand at 3599.014 kb on + strand, within Shewana3_2993 at 3599.015 kb on - strand, within Shewana3_2993 at 3599.216 kb on + strand, within Shewana3_2993 at 3599.279 kb on - strand, within Shewana3_2993 at 3599.488 kb on + strand, within Shewana3_2993 at 3599.550 kb on + strand at 3599.558 kb on - strand at 3599.558 kb on - strand at 3599.707 kb on - strand at 3599.833 kb on + strand, within Shewana3_2994 at 3600.515 kb on - strand, within Shewana3_2995
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,597,929 - +0.0 3,597,951 - +0.1 3,598,401 + Shewana3_2992 0.46 -1.6 3,598,403 + Shewana3_2992 0.46 -0.4 3,598,590 - Shewana3_2992 0.75 -1.3 3,598,628 + Shewana3_2992 0.81 +0.0 3,598,674 + Shewana3_2992 0.89 +0.4 3,598,682 + +1.6 3,598,682 + +0.5 3,598,682 + +0.7 3,598,682 + +1.0 3,598,682 + -1.5 3,598,682 + -0.1 3,599,014 + Shewana3_2993 0.20 +0.7 3,599,015 - Shewana3_2993 0.20 -2.2 3,599,216 + Shewana3_2993 0.47 +0.6 3,599,279 - Shewana3_2993 0.55 +0.4 3,599,488 + Shewana3_2993 0.83 +0.9 3,599,550 + +0.5 3,599,558 - -1.7 3,599,558 - -1.0 3,599,707 - -2.1 3,599,833 + Shewana3_2994 0.39 +0.7 3,600,515 - Shewana3_2995 0.18 +0.3
Or see this region's nucleotide sequence