Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2849

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2848 and Shewana3_2849 are separated by 85 nucleotidesShewana3_2849 and Shewana3_2850 are separated by 253 nucleotides Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317 _2848 Shewana3_2849: Shewana3_2849 - sigma-54 dependent trancsriptional regulator (RefSeq), at 3,410,403 to 3,411,812 _2849 Shewana3_2850: Shewana3_2850 - hypothetical protein (RefSeq), at 3,412,066 to 3,412,542 _2850 Position (kb) 3410 3411 3412Strain fitness (log2 ratio) -2 -1 0 1 2at 3409.662 kb on - strand, within Shewana3_2848at 3409.714 kb on - strand, within Shewana3_2848at 3409.923 kb on + strand, within Shewana3_2848at 3409.931 kb on - strand, within Shewana3_2848at 3409.946 kb on + strand, within Shewana3_2848at 3409.954 kb on - strand, within Shewana3_2848at 3410.139 kb on + strand, within Shewana3_2848at 3411.010 kb on - strand, within Shewana3_2849at 3411.027 kb on - strand, within Shewana3_2849at 3411.182 kb on - strand, within Shewana3_2849at 3411.284 kb on - strand, within Shewana3_2849at 3411.357 kb on - strand, within Shewana3_2849at 3411.474 kb on + strand, within Shewana3_2849at 3411.687 kb on - strandat 3411.750 kb on - strandat 3411.760 kb on - strandat 3411.824 kb on - strandat 3411.851 kb on - strandat 3412.049 kb on - strandat 3412.395 kb on - strand, within Shewana3_2850at 3412.423 kb on - strand, within Shewana3_2850at 3412.459 kb on + strand, within Shewana3_2850at 3412.514 kb on + strandat 3412.514 kb on + strandat 3412.514 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,409,662 - Shewana3_2848 0.61 -1.3
3,409,714 - Shewana3_2848 0.64 +0.5
3,409,923 + Shewana3_2848 0.77 -1.4
3,409,931 - Shewana3_2848 0.77 -0.8
3,409,946 + Shewana3_2848 0.78 -0.4
3,409,954 - Shewana3_2848 0.79 -0.7
3,410,139 + Shewana3_2848 0.89 -2.2
3,411,010 - Shewana3_2849 0.43 +0.9
3,411,027 - Shewana3_2849 0.44 +1.8
3,411,182 - Shewana3_2849 0.55 +1.1
3,411,284 - Shewana3_2849 0.62 -0.2
3,411,357 - Shewana3_2849 0.68 -1.1
3,411,474 + Shewana3_2849 0.76 +0.6
3,411,687 - +0.1
3,411,750 - -0.1
3,411,760 - +0.6
3,411,824 - +0.8
3,411,851 - +0.9
3,412,049 - -1.1
3,412,395 - Shewana3_2850 0.69 +1.1
3,412,423 - Shewana3_2850 0.75 +0.2
3,412,459 + Shewana3_2850 0.82 -1.5
3,412,514 + +1.8
3,412,514 + -0.1
3,412,514 + +0.8

Or see this region's nucleotide sequence