Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2793 and Shewana3_2794 are separated by 37 nucleotides Shewana3_2794 and Shewana3_2795 are separated by 74 nucleotides
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Shewana3_2794: Shewana3_2794 - putative hydrolase (RefSeq), at 3,333,270 to 3,334,028
_2794
Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351
_2795
Position (kb)
3333
3334
3335 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3332.278 kb on + strand, within Shewana3_2793 at 3332.431 kb on + strand, within Shewana3_2793 at 3332.639 kb on - strand, within Shewana3_2793 at 3332.644 kb on - strand, within Shewana3_2793 at 3332.653 kb on + strand, within Shewana3_2793 at 3332.688 kb on + strand, within Shewana3_2793 at 3332.732 kb on - strand, within Shewana3_2793 at 3332.809 kb on + strand, within Shewana3_2793 at 3332.935 kb on + strand, within Shewana3_2793 at 3332.966 kb on - strand, within Shewana3_2793 at 3333.079 kb on + strand, within Shewana3_2793 at 3333.093 kb on - strand, within Shewana3_2793 at 3333.137 kb on + strand at 3333.156 kb on + strand at 3333.185 kb on + strand at 3333.321 kb on - strand at 3333.337 kb on + strand at 3333.469 kb on - strand, within Shewana3_2794 at 3334.009 kb on - strand at 3334.023 kb on - strand at 3334.043 kb on - strand at 3334.043 kb on - strand at 3334.068 kb on - strand at 3334.389 kb on - strand at 3334.389 kb on - strand at 3334.795 kb on + strand, within Shewana3_2795 at 3334.887 kb on + strand, within Shewana3_2795
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,332,278 + Shewana3_2793 0.13 +0.1 3,332,431 + Shewana3_2793 0.27 -1.5 3,332,639 - Shewana3_2793 0.46 +0.3 3,332,644 - Shewana3_2793 0.46 -0.8 3,332,653 + Shewana3_2793 0.47 -5.2 3,332,688 + Shewana3_2793 0.50 +0.3 3,332,732 - Shewana3_2793 0.54 -0.6 3,332,809 + Shewana3_2793 0.61 -1.9 3,332,935 + Shewana3_2793 0.73 +1.4 3,332,966 - Shewana3_2793 0.76 +0.4 3,333,079 + Shewana3_2793 0.86 +1.2 3,333,093 - Shewana3_2793 0.87 -0.0 3,333,137 + +1.4 3,333,156 + +0.6 3,333,185 + +1.0 3,333,321 - +0.5 3,333,337 + -0.4 3,333,469 - Shewana3_2794 0.26 -2.7 3,334,009 - +0.3 3,334,023 - +0.3 3,334,043 - +0.8 3,334,043 - +0.5 3,334,068 - -1.5 3,334,389 - -0.6 3,334,389 - -1.6 3,334,795 + Shewana3_2795 0.21 +0.9 3,334,887 + Shewana3_2795 0.24 +0.8
Or see this region's nucleotide sequence