Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2788 and Shewana3_2789 are separated by 4 nucleotides Shewana3_2789 and Shewana3_2790 are separated by 107 nucleotides Shewana3_2790 and Shewana3_2791 are separated by 62 nucleotides Shewana3_2791 and Shewana3_2792 overlap by 11 nucleotides
Shewana3_2788: Shewana3_2788 - hypothetical protein (RefSeq), at 3,328,480 to 3,329,154
_2788
Shewana3_2789: Shewana3_2789 - hypothetical protein (RefSeq), at 3,329,159 to 3,329,893
_2789
Shewana3_2790: Shewana3_2790 - fructokinase (RefSeq), at 3,330,001 to 3,330,921
_2790
Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790
_2791
Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076
_2792
Position (kb) 3330
3331 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 3329.019 kb on - strand, within Shewana3_2788 at 3329.067 kb on - strand, within Shewana3_2788 at 3329.116 kb on - strand at 3329.167 kb on + strand at 3329.454 kb on - strand, within Shewana3_2789 at 3329.535 kb on + strand, within Shewana3_2789 at 3329.638 kb on + strand, within Shewana3_2789 at 3329.646 kb on - strand, within Shewana3_2789 at 3329.646 kb on - strand, within Shewana3_2789 at 3329.696 kb on + strand, within Shewana3_2789 at 3329.910 kb on + strand at 3329.918 kb on - strand at 3330.054 kb on - strand at 3330.117 kb on + strand, within Shewana3_2790 at 3330.125 kb on - strand, within Shewana3_2790 at 3330.325 kb on + strand, within Shewana3_2790 at 3330.421 kb on - strand, within Shewana3_2790 at 3330.624 kb on + strand, within Shewana3_2790 at 3331.004 kb on - strand at 3331.064 kb on - strand at 3331.165 kb on + strand, within Shewana3_2791 at 3331.173 kb on - strand, within Shewana3_2791 at 3331.916 kb on - strand, within Shewana3_2792
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,329,019 - Shewana3_2788 0.80 -0.3 3,329,067 - Shewana3_2788 0.87 +0.9 3,329,116 - -1.8 3,329,167 + +0.2 3,329,454 - Shewana3_2789 0.40 +1.6 3,329,535 + Shewana3_2789 0.51 +0.3 3,329,638 + Shewana3_2789 0.65 +1.8 3,329,646 - Shewana3_2789 0.66 -0.3 3,329,646 - Shewana3_2789 0.66 -1.3 3,329,696 + Shewana3_2789 0.73 +0.2 3,329,910 + -0.9 3,329,918 - -0.0 3,330,054 - -2.2 3,330,117 + Shewana3_2790 0.13 -2.8 3,330,125 - Shewana3_2790 0.13 -0.4 3,330,325 + Shewana3_2790 0.35 -1.8 3,330,421 - Shewana3_2790 0.46 -2.5 3,330,624 + Shewana3_2790 0.68 -2.0 3,331,004 - -1.5 3,331,064 - -2.2 3,331,165 + Shewana3_2791 0.22 -5.5 3,331,173 - Shewana3_2791 0.23 -2.5 3,331,916 - Shewana3_2792 0.46 +0.7
Or see this region's nucleotide sequence