Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2743

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2741 and Shewana3_2742 are separated by 315 nucleotidesShewana3_2742 and Shewana3_2743 are separated by 27 nucleotidesShewana3_2743 and Shewana3_2744 are separated by 228 nucleotidesShewana3_2744 and Shewana3_2745 are separated by 368 nucleotides Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046 _2741 Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955 _2742 Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531 _2743 Shewana3_2744: Shewana3_2744 - hypothetical protein (RefSeq), at 3,274,760 to 3,275,080 _2744 Shewana3_2745: Shewana3_2745 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,275,449 to 3,277,014 _2745 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -3 -2 -1 0 1at 3273.449 kb on - strand, within Shewana3_2742at 3273.449 kb on - strand, within Shewana3_2742at 3273.489 kb on + strand, within Shewana3_2742at 3273.542 kb on - strand, within Shewana3_2742at 3273.555 kb on - strand, within Shewana3_2742at 3273.998 kb on - strandat 3274.251 kb on - strand, within Shewana3_2743at 3274.337 kb on + strand, within Shewana3_2743at 3274.374 kb on - strand, within Shewana3_2743at 3274.377 kb on + strand, within Shewana3_2743at 3274.385 kb on - strand, within Shewana3_2743at 3274.435 kb on - strand, within Shewana3_2743at 3274.749 kb on + strandat 3274.757 kb on - strandat 3274.775 kb on + strandat 3274.783 kb on - strandat 3274.783 kb on - strandat 3275.159 kb on - strandat 3275.234 kb on - strandat 3275.376 kb on + strandat 3275.376 kb on + strandat 3275.376 kb on + strandat 3275.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,273,449 - Shewana3_2742 0.15 -0.5
3,273,449 - Shewana3_2742 0.15 +0.2
3,273,489 + Shewana3_2742 0.21 -2.2
3,273,542 - Shewana3_2742 0.30 +0.3
3,273,555 - Shewana3_2742 0.32 +0.3
3,273,998 - +0.5
3,274,251 - Shewana3_2743 0.49 +0.6
3,274,337 + Shewana3_2743 0.64 -0.1
3,274,374 - Shewana3_2743 0.71 +0.7
3,274,377 + Shewana3_2743 0.72 +0.3
3,274,385 - Shewana3_2743 0.73 +0.8
3,274,435 - Shewana3_2743 0.82 -0.4
3,274,749 + +0.5
3,274,757 - +0.5
3,274,775 + -1.6
3,274,783 - -0.1
3,274,783 - +1.4
3,275,159 - -2.0
3,275,234 - +0.9
3,275,376 + +0.9
3,275,376 + -1.4
3,275,376 + -1.5
3,275,379 - -3.1

Or see this region's nucleotide sequence