Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2741 and Shewana3_2742 are separated by 315 nucleotides Shewana3_2742 and Shewana3_2743 are separated by 27 nucleotides Shewana3_2743 and Shewana3_2744 are separated by 228 nucleotides Shewana3_2744 and Shewana3_2745 are separated by 368 nucleotides
Shewana3_2741: Shewana3_2741 - hypothetical protein (RefSeq), at 3,272,444 to 3,273,046
_2741
Shewana3_2742: Shewana3_2742 - lysine exporter protein LysE/YggA (RefSeq), at 3,273,362 to 3,273,955
_2742
Shewana3_2743: Shewana3_2743 - hypothetical protein (RefSeq), at 3,273,983 to 3,274,531
_2743
Shewana3_2744: Shewana3_2744 - hypothetical protein (RefSeq), at 3,274,760 to 3,275,080
_2744
Shewana3_2745: Shewana3_2745 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,275,449 to 3,277,014
_2745
Position (kb)
3273
3274
3275 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.449 kb on - strand, within Shewana3_2742 at 3273.489 kb on + strand, within Shewana3_2742 at 3273.542 kb on - strand, within Shewana3_2742 at 3273.555 kb on - strand, within Shewana3_2742 at 3273.998 kb on - strand at 3274.251 kb on - strand, within Shewana3_2743 at 3274.337 kb on + strand, within Shewana3_2743 at 3274.374 kb on - strand, within Shewana3_2743 at 3274.377 kb on + strand, within Shewana3_2743 at 3274.385 kb on - strand, within Shewana3_2743 at 3274.435 kb on - strand, within Shewana3_2743 at 3274.749 kb on + strand at 3274.757 kb on - strand at 3274.775 kb on + strand at 3274.783 kb on - strand at 3274.783 kb on - strand at 3275.159 kb on - strand at 3275.234 kb on - strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.376 kb on + strand at 3275.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,273,449 - Shewana3_2742 0.15 -0.5 3,273,449 - Shewana3_2742 0.15 +0.2 3,273,489 + Shewana3_2742 0.21 -2.2 3,273,542 - Shewana3_2742 0.30 +0.3 3,273,555 - Shewana3_2742 0.32 +0.3 3,273,998 - +0.5 3,274,251 - Shewana3_2743 0.49 +0.6 3,274,337 + Shewana3_2743 0.64 -0.1 3,274,374 - Shewana3_2743 0.71 +0.7 3,274,377 + Shewana3_2743 0.72 +0.3 3,274,385 - Shewana3_2743 0.73 +0.8 3,274,435 - Shewana3_2743 0.82 -0.4 3,274,749 + +0.5 3,274,757 - +0.5 3,274,775 + -1.6 3,274,783 - -0.1 3,274,783 - +1.4 3,275,159 - -2.0 3,275,234 - +0.9 3,275,376 + +0.9 3,275,376 + -1.4 3,275,376 + -1.5 3,275,379 - -3.1
Or see this region's nucleotide sequence