Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2730

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2728 and Shewana3_2729 are separated by 16 nucleotidesShewana3_2729 and Shewana3_2730 are separated by 79 nucleotidesShewana3_2730 and Shewana3_2731 are separated by 410 nucleotides Shewana3_2728: Shewana3_2728 - hypothetical protein (RefSeq), at 3,259,143 to 3,259,592 _2728 Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208 _2729 Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740 _2730 Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861 _2731 Position (kb) 3260 3261Strain fitness (log2 ratio) -3 -2 -1 0 1at 3259.391 kb on + strand, within Shewana3_2728at 3259.405 kb on + strand, within Shewana3_2728at 3259.412 kb on - strand, within Shewana3_2728at 3259.428 kb on - strand, within Shewana3_2728at 3259.448 kb on + strand, within Shewana3_2728at 3259.456 kb on - strand, within Shewana3_2728at 3259.460 kb on + strand, within Shewana3_2728at 3259.460 kb on + strand, within Shewana3_2728at 3259.468 kb on - strand, within Shewana3_2728at 3259.579 kb on + strandat 3259.579 kb on + strandat 3259.619 kb on - strandat 3259.644 kb on + strandat 3259.835 kb on - strand, within Shewana3_2729at 3259.925 kb on + strand, within Shewana3_2729at 3259.971 kb on - strand, within Shewana3_2729at 3260.026 kb on - strand, within Shewana3_2729at 3260.148 kb on + strand, within Shewana3_2729at 3260.247 kb on + strandat 3260.255 kb on - strandat 3260.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,259,391 + Shewana3_2728 0.55 -1.2
3,259,405 + Shewana3_2728 0.58 +0.6
3,259,412 - Shewana3_2728 0.60 -3.0
3,259,428 - Shewana3_2728 0.63 +0.8
3,259,448 + Shewana3_2728 0.68 +1.1
3,259,456 - Shewana3_2728 0.70 +0.9
3,259,460 + Shewana3_2728 0.70 +0.5
3,259,460 + Shewana3_2728 0.70 -2.0
3,259,468 - Shewana3_2728 0.72 -1.2
3,259,579 + +0.4
3,259,579 + +0.5
3,259,619 - +0.7
3,259,644 + +0.6
3,259,835 - Shewana3_2729 0.38 -1.9
3,259,925 + Shewana3_2729 0.53 -1.9
3,259,971 - Shewana3_2729 0.60 -1.6
3,260,026 - Shewana3_2729 0.69 -2.7
3,260,148 + Shewana3_2729 0.90 +0.9
3,260,247 + -2.0
3,260,255 - +0.6
3,260,905 - -2.1

Or see this region's nucleotide sequence