Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2699 and Shewana3_2700 are separated by 7 nucleotides Shewana3_2700 and Shewana3_2701 are separated by 5 nucleotides
Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466
_2699
Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760
_2700
Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136
_2701
Position (kb)
3226
3227
3228 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3225.683 kb on + strand, within Shewana3_2699 at 3225.691 kb on - strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.799 kb on + strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.807 kb on - strand, within Shewana3_2699 at 3225.905 kb on - strand, within Shewana3_2699 at 3226.083 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.127 kb on + strand, within Shewana3_2699 at 3226.194 kb on - strand, within Shewana3_2699 at 3226.261 kb on - strand, within Shewana3_2699 at 3226.403 kb on + strand at 3226.403 kb on + strand at 3226.488 kb on - strand at 3226.658 kb on - strand, within Shewana3_2700 at 3227.258 kb on + strand, within Shewana3_2700 at 3227.266 kb on - strand, within Shewana3_2700 at 3227.335 kb on - strand, within Shewana3_2700 at 3227.368 kb on + strand, within Shewana3_2700 at 3227.536 kb on + strand, within Shewana3_2700 at 3227.659 kb on - strand at 3227.674 kb on + strand at 3227.685 kb on + strand at 3227.905 kb on + strand, within Shewana3_2701 at 3227.913 kb on - strand, within Shewana3_2701 at 3227.943 kb on - strand, within Shewana3_2701 at 3228.012 kb on + strand, within Shewana3_2701 at 3228.066 kb on + strand, within Shewana3_2701 at 3228.076 kb on + strand, within Shewana3_2701 at 3228.175 kb on - strand, within Shewana3_2701
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 3,225,683 + Shewana3_2699 0.32 -0.3 3,225,691 - Shewana3_2699 0.33 -1.8 3,225,799 + Shewana3_2699 0.42 -0.8 3,225,799 + Shewana3_2699 0.42 -0.1 3,225,799 + Shewana3_2699 0.42 -1.0 3,225,807 - Shewana3_2699 0.43 +0.6 3,225,807 - Shewana3_2699 0.43 -1.7 3,225,905 - Shewana3_2699 0.52 -0.8 3,226,083 + Shewana3_2699 0.67 -0.8 3,226,127 + Shewana3_2699 0.71 +0.7 3,226,127 + Shewana3_2699 0.71 -3.4 3,226,194 - Shewana3_2699 0.76 +0.6 3,226,261 - Shewana3_2699 0.82 +0.6 3,226,403 + +0.1 3,226,403 + +0.3 3,226,488 - +0.5 3,226,658 - Shewana3_2700 0.14 -1.7 3,227,258 + Shewana3_2700 0.61 +0.5 3,227,266 - Shewana3_2700 0.62 +0.4 3,227,335 - Shewana3_2700 0.67 -0.8 3,227,368 + Shewana3_2700 0.69 +0.8 3,227,536 + Shewana3_2700 0.83 +0.1 3,227,659 - +0.4 3,227,674 + +0.2 3,227,685 + -0.6 3,227,905 + Shewana3_2701 0.10 -1.1 3,227,913 - Shewana3_2701 0.11 +0.3 3,227,943 - Shewana3_2701 0.13 -1.2 3,228,012 + Shewana3_2701 0.18 +0.2 3,228,066 + Shewana3_2701 0.22 +0.5 3,228,076 + Shewana3_2701 0.23 +0.2 3,228,175 - Shewana3_2701 0.30 -1.0
Or see this region's nucleotide sequence