Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2700

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2699 and Shewana3_2700 are separated by 7 nucleotidesShewana3_2700 and Shewana3_2701 are separated by 5 nucleotides Shewana3_2699: Shewana3_2699 - sugar isomerase (SIS) (RefSeq), at 3,225,306 to 3,226,466 _2699 Shewana3_2700: Shewana3_2700 - tagatose-bisphosphate aldolase noncatalytic subunit (RefSeq), at 3,226,474 to 3,227,760 _2700 Shewana3_2701: Shewana3_2701 - oxidoreductase domain-containing protein (RefSeq), at 3,227,766 to 3,229,136 _2701 Position (kb) 3226 3227 3228Strain fitness (log2 ratio) -3 -2 -1 0 1at 3225.683 kb on + strand, within Shewana3_2699at 3225.691 kb on - strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.799 kb on + strand, within Shewana3_2699at 3225.807 kb on - strand, within Shewana3_2699at 3225.807 kb on - strand, within Shewana3_2699at 3225.905 kb on - strand, within Shewana3_2699at 3226.083 kb on + strand, within Shewana3_2699at 3226.127 kb on + strand, within Shewana3_2699at 3226.127 kb on + strand, within Shewana3_2699at 3226.194 kb on - strand, within Shewana3_2699at 3226.261 kb on - strand, within Shewana3_2699at 3226.403 kb on + strandat 3226.403 kb on + strandat 3226.488 kb on - strandat 3226.658 kb on - strand, within Shewana3_2700at 3227.258 kb on + strand, within Shewana3_2700at 3227.266 kb on - strand, within Shewana3_2700at 3227.335 kb on - strand, within Shewana3_2700at 3227.368 kb on + strand, within Shewana3_2700at 3227.536 kb on + strand, within Shewana3_2700at 3227.659 kb on - strandat 3227.674 kb on + strandat 3227.685 kb on + strandat 3227.905 kb on + strand, within Shewana3_2701at 3227.913 kb on - strand, within Shewana3_2701at 3227.943 kb on - strand, within Shewana3_2701at 3228.012 kb on + strand, within Shewana3_2701at 3228.066 kb on + strand, within Shewana3_2701at 3228.076 kb on + strand, within Shewana3_2701at 3228.175 kb on - strand, within Shewana3_2701

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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3,225,683 + Shewana3_2699 0.32 -0.3
3,225,691 - Shewana3_2699 0.33 -1.8
3,225,799 + Shewana3_2699 0.42 -0.8
3,225,799 + Shewana3_2699 0.42 -0.1
3,225,799 + Shewana3_2699 0.42 -1.0
3,225,807 - Shewana3_2699 0.43 +0.6
3,225,807 - Shewana3_2699 0.43 -1.7
3,225,905 - Shewana3_2699 0.52 -0.8
3,226,083 + Shewana3_2699 0.67 -0.8
3,226,127 + Shewana3_2699 0.71 +0.7
3,226,127 + Shewana3_2699 0.71 -3.4
3,226,194 - Shewana3_2699 0.76 +0.6
3,226,261 - Shewana3_2699 0.82 +0.6
3,226,403 + +0.1
3,226,403 + +0.3
3,226,488 - +0.5
3,226,658 - Shewana3_2700 0.14 -1.7
3,227,258 + Shewana3_2700 0.61 +0.5
3,227,266 - Shewana3_2700 0.62 +0.4
3,227,335 - Shewana3_2700 0.67 -0.8
3,227,368 + Shewana3_2700 0.69 +0.8
3,227,536 + Shewana3_2700 0.83 +0.1
3,227,659 - +0.4
3,227,674 + +0.2
3,227,685 + -0.6
3,227,905 + Shewana3_2701 0.10 -1.1
3,227,913 - Shewana3_2701 0.11 +0.3
3,227,943 - Shewana3_2701 0.13 -1.2
3,228,012 + Shewana3_2701 0.18 +0.2
3,228,066 + Shewana3_2701 0.22 +0.5
3,228,076 + Shewana3_2701 0.23 +0.2
3,228,175 - Shewana3_2701 0.30 -1.0

Or see this region's nucleotide sequence