Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2609

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2607 and Shewana3_2608 are separated by 57 nucleotidesShewana3_2608 and Shewana3_2609 are separated by 125 nucleotidesShewana3_2609 and Shewana3_2610 are separated by 351 nucleotides Shewana3_2607: Shewana3_2607 - hypothetical protein (RefSeq), at 3,112,067 to 3,112,504 _2607 Shewana3_2608: Shewana3_2608 - hypothetical protein (RefSeq), at 3,112,562 to 3,113,071 _2608 Shewana3_2609: Shewana3_2609 - hypothetical protein (RefSeq), at 3,113,197 to 3,113,655 _2609 Shewana3_2610: Shewana3_2610 - peptidase M23B (RefSeq), at 3,114,007 to 3,115,302 _2610 Position (kb) 3113 3114Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3112.231 kb on - strand, within Shewana3_2607at 3112.301 kb on + strand, within Shewana3_2607at 3112.552 kb on + strandat 3112.560 kb on - strandat 3112.560 kb on - strandat 3113.371 kb on + strand, within Shewana3_2609at 3113.583 kb on + strand, within Shewana3_2609at 3113.760 kb on - strandat 3113.840 kb on - strandat 3113.911 kb on - strandat 3113.921 kb on + strandat 3113.931 kb on - strandat 3114.501 kb on - strand, within Shewana3_2610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
3,112,231 - Shewana3_2607 0.37 -2.6
3,112,301 + Shewana3_2607 0.53 +0.5
3,112,552 + +1.7
3,112,560 - +1.0
3,112,560 - +0.6
3,113,371 + Shewana3_2609 0.38 +0.7
3,113,583 + Shewana3_2609 0.84 +0.3
3,113,760 - -1.2
3,113,840 - -2.4
3,113,911 - -1.0
3,113,921 + -0.3
3,113,931 - +0.2
3,114,501 - Shewana3_2610 0.38 +3.3

Or see this region's nucleotide sequence