Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2458

Experiment: D-Glucosamine Hydrochloride (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2457 and Shewana3_2458 are separated by 261 nucleotidesShewana3_2458 and Shewana3_2459 are separated by 208 nucleotides Shewana3_2457: Shewana3_2457 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 2,945,191 to 2,947,119 _2457 Shewana3_2458: Shewana3_2458 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,947,381 to 2,947,869 _2458 Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370 _2459 Position (kb) 2947 2948Strain fitness (log2 ratio) -3 -2 -1 0 1at 2946.384 kb on - strand, within Shewana3_2457at 2946.489 kb on + strand, within Shewana3_2457at 2946.750 kb on + strand, within Shewana3_2457at 2946.758 kb on - strand, within Shewana3_2457at 2946.758 kb on - strand, within Shewana3_2457at 2947.014 kb on - strandat 2947.054 kb on - strandat 2947.056 kb on + strandat 2947.379 kb on + strandat 2947.379 kb on + strandat 2947.387 kb on - strandat 2947.466 kb on - strand, within Shewana3_2458at 2947.684 kb on - strand, within Shewana3_2458at 2947.840 kb on - strandat 2947.847 kb on + strandat 2947.922 kb on - strandat 2947.941 kb on + strandat 2948.105 kb on - strandat 2948.165 kb on - strandat 2948.165 kb on - strandat 2948.254 kb on + strand, within Shewana3_2459at 2948.432 kb on - strand, within Shewana3_2459at 2948.687 kb on + strand, within Shewana3_2459at 2948.710 kb on - strand, within Shewana3_2459at 2948.760 kb on - strand, within Shewana3_2459at 2948.843 kb on + strand, within Shewana3_2459at 2948.843 kb on + strand, within Shewana3_2459

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
remove
2,946,384 - Shewana3_2457 0.62 +0.3
2,946,489 + Shewana3_2457 0.67 +1.2
2,946,750 + Shewana3_2457 0.81 -0.8
2,946,758 - Shewana3_2457 0.81 -0.3
2,946,758 - Shewana3_2457 0.81 -0.0
2,947,014 - -0.8
2,947,054 - -0.3
2,947,056 + +0.9
2,947,379 + -1.6
2,947,379 + +0.8
2,947,387 - -1.5
2,947,466 - Shewana3_2458 0.17 -2.2
2,947,684 - Shewana3_2458 0.62 +0.1
2,947,840 - -0.9
2,947,847 + +0.5
2,947,922 - +0.4
2,947,941 + +0.8
2,948,105 - -1.9
2,948,165 - +0.7
2,948,165 - -0.3
2,948,254 + Shewana3_2459 0.14 +0.8
2,948,432 - Shewana3_2459 0.27 -0.4
2,948,687 + Shewana3_2459 0.47 +1.6
2,948,710 - Shewana3_2459 0.49 -2.8
2,948,760 - Shewana3_2459 0.53 -0.9
2,948,843 + Shewana3_2459 0.59 -2.8
2,948,843 + Shewana3_2459 0.59 +0.4

Or see this region's nucleotide sequence