Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2457 and Shewana3_2458 are separated by 261 nucleotides Shewana3_2458 and Shewana3_2459 are separated by 208 nucleotides
Shewana3_2457: Shewana3_2457 - peptidase M1, membrane alanine aminopeptidase (RefSeq), at 2,945,191 to 2,947,119
_2457
Shewana3_2458: Shewana3_2458 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 2,947,381 to 2,947,869
_2458
Shewana3_2459: Shewana3_2459 - lytic murein transglycosylase (RefSeq), at 2,948,078 to 2,949,370
_2459
Position (kb)
2947
2948 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2946.384 kb on - strand, within Shewana3_2457 at 2946.489 kb on + strand, within Shewana3_2457 at 2946.750 kb on + strand, within Shewana3_2457 at 2946.758 kb on - strand, within Shewana3_2457 at 2946.758 kb on - strand, within Shewana3_2457 at 2947.014 kb on - strand at 2947.054 kb on - strand at 2947.056 kb on + strand at 2947.379 kb on + strand at 2947.379 kb on + strand at 2947.387 kb on - strand at 2947.466 kb on - strand, within Shewana3_2458 at 2947.684 kb on - strand, within Shewana3_2458 at 2947.840 kb on - strand at 2947.847 kb on + strand at 2947.922 kb on - strand at 2947.941 kb on + strand at 2948.105 kb on - strand at 2948.165 kb on - strand at 2948.165 kb on - strand at 2948.254 kb on + strand, within Shewana3_2459 at 2948.432 kb on - strand, within Shewana3_2459 at 2948.687 kb on + strand, within Shewana3_2459 at 2948.710 kb on - strand, within Shewana3_2459 at 2948.760 kb on - strand, within Shewana3_2459 at 2948.843 kb on + strand, within Shewana3_2459 at 2948.843 kb on + strand, within Shewana3_2459
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 2,946,384 - Shewana3_2457 0.62 +0.3 2,946,489 + Shewana3_2457 0.67 +1.2 2,946,750 + Shewana3_2457 0.81 -0.8 2,946,758 - Shewana3_2457 0.81 -0.3 2,946,758 - Shewana3_2457 0.81 -0.0 2,947,014 - -0.8 2,947,054 - -0.3 2,947,056 + +0.9 2,947,379 + -1.6 2,947,379 + +0.8 2,947,387 - -1.5 2,947,466 - Shewana3_2458 0.17 -2.2 2,947,684 - Shewana3_2458 0.62 +0.1 2,947,840 - -0.9 2,947,847 + +0.5 2,947,922 - +0.4 2,947,941 + +0.8 2,948,105 - -1.9 2,948,165 - +0.7 2,948,165 - -0.3 2,948,254 + Shewana3_2459 0.14 +0.8 2,948,432 - Shewana3_2459 0.27 -0.4 2,948,687 + Shewana3_2459 0.47 +1.6 2,948,710 - Shewana3_2459 0.49 -2.8 2,948,760 - Shewana3_2459 0.53 -0.9 2,948,843 + Shewana3_2459 0.59 -2.8 2,948,843 + Shewana3_2459 0.59 +0.4
Or see this region's nucleotide sequence