Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2061

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2059 and Shewana3_2060 are separated by 56 nucleotidesShewana3_2060 and Shewana3_2061 are separated by 259 nucleotidesShewana3_2061 and Shewana3_2062 are separated by 106 nucleotides Shewana3_2059: Shewana3_2059 - DsrE family protein (RefSeq), at 2,465,566 to 2,465,958 _2059 Shewana3_2060: Shewana3_2060 - hypothetical protein (RefSeq), at 2,466,015 to 2,466,674 _2060 Shewana3_2061: Shewana3_2061 - putative DNA-binding transcriptional regulator (RefSeq), at 2,466,934 to 2,467,845 _2061 Shewana3_2062: Shewana3_2062 - inner membrane transport protein YdhC (RefSeq), at 2,467,952 to 2,469,223 _2062 Position (kb) 2466 2467 2468Strain fitness (log2 ratio) -2 -1 0 1 2at 2466.070 kb on - strandat 2466.802 kb on - strandat 2466.890 kb on - strandat 2466.915 kb on - strandat 2467.140 kb on + strand, within Shewana3_2061at 2467.411 kb on + strand, within Shewana3_2061at 2467.555 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061at 2467.668 kb on - strand, within Shewana3_2061at 2468.141 kb on + strand, within Shewana3_2062at 2468.304 kb on + strand, within Shewana3_2062at 2468.625 kb on + strand, within Shewana3_2062at 2468.785 kb on + strand, within Shewana3_2062at 2468.796 kb on + strand, within Shewana3_2062

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,466,070 - +0.5
2,466,802 - -2.3
2,466,890 - -0.5
2,466,915 - +0.3
2,467,140 + Shewana3_2061 0.23 -1.1
2,467,411 + Shewana3_2061 0.52 -2.1
2,467,555 - Shewana3_2061 0.68 +1.7
2,467,668 - Shewana3_2061 0.80 +2.5
2,467,668 - Shewana3_2061 0.80 +0.8
2,468,141 + Shewana3_2062 0.15 -1.5
2,468,304 + Shewana3_2062 0.28 +0.5
2,468,625 + Shewana3_2062 0.53 +2.3
2,468,785 + Shewana3_2062 0.65 +0.5
2,468,796 + Shewana3_2062 0.66 +1.4

Or see this region's nucleotide sequence