Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1731

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1730 and cysB are separated by 227 nucleotidescysB and Shewana3_1732 are separated by 81 nucleotidesShewana3_1732 and Shewana3_1733 are separated by 221 nucleotides Shewana3_1730: Shewana3_1730 - hypothetical protein (RefSeq), at 2,038,597 to 2,039,376 _1730 Shewana3_1731: cysB - transcriptional regulator CysB (RefSeq), at 2,039,604 to 2,040,578 cysB Shewana3_1732: Shewana3_1732 - two component LuxR family transcriptional regulator (RefSeq), at 2,040,660 to 2,041,322 _1732 Shewana3_1733: Shewana3_1733 - thioesterase superfamily protein (RefSeq), at 2,041,544 to 2,041,975 _1733 Position (kb) 2039 2040 2041Strain fitness (log2 ratio) -3 -2 -1 0 1at 2039.080 kb on + strand, within Shewana3_1730at 2039.203 kb on - strand, within Shewana3_1730at 2039.221 kb on - strand, within Shewana3_1730at 2039.616 kb on - strandat 2039.618 kb on + strandat 2039.976 kb on + strand, within cysBat 2040.828 kb on + strand, within Shewana3_1732at 2040.846 kb on - strand, within Shewana3_1732at 2040.965 kb on - strand, within Shewana3_1732at 2041.079 kb on + strand, within Shewana3_1732at 2041.087 kb on - strand, within Shewana3_1732at 2041.179 kb on + strand, within Shewana3_1732at 2041.511 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,039,080 + Shewana3_1730 0.62 +1.1
2,039,203 - Shewana3_1730 0.78 +1.0
2,039,221 - Shewana3_1730 0.80 +0.4
2,039,616 - -2.7
2,039,618 + -3.3
2,039,976 + cysB Shewana3_1731 0.38 -2.3
2,040,828 + Shewana3_1732 0.25 -2.9
2,040,846 - Shewana3_1732 0.28 -0.3
2,040,965 - Shewana3_1732 0.46 -1.3
2,041,079 + Shewana3_1732 0.63 -3.5
2,041,087 - Shewana3_1732 0.64 -3.6
2,041,179 + Shewana3_1732 0.78 -2.3
2,041,511 - +0.2

Or see this region's nucleotide sequence