Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1369

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1367 and Shewana3_1368 are separated by 154 nucleotidesShewana3_1368 and Shewana3_1369 are separated by 27 nucleotidesShewana3_1369 and Shewana3_1370 are separated by 12 nucleotides Shewana3_1367: Shewana3_1367 - CheW protein (RefSeq), at 1,579,950 to 1,580,444 _1367 Shewana3_1368: Shewana3_1368 - hypothetical protein (RefSeq), at 1,580,599 to 1,580,997 _1368 Shewana3_1369: Shewana3_1369 - FlhB domain-containing protein (RefSeq), at 1,581,025 to 1,581,336 _1369 Shewana3_1370: Shewana3_1370 - hypothetical protein (RefSeq), at 1,581,349 to 1,583,400 _1370 Position (kb) 1581 1582Strain fitness (log2 ratio) -2 -1 0 1 2at 1580.143 kb on + strand, within Shewana3_1367at 1580.344 kb on - strand, within Shewana3_1367at 1580.446 kb on - strandat 1580.481 kb on - strandat 1580.623 kb on + strandat 1580.623 kb on + strandat 1580.653 kb on - strand, within Shewana3_1368at 1580.881 kb on + strand, within Shewana3_1368at 1580.889 kb on - strand, within Shewana3_1368at 1581.108 kb on + strand, within Shewana3_1369at 1581.116 kb on - strand, within Shewana3_1369at 1581.439 kb on + strandat 1581.683 kb on + strand, within Shewana3_1370at 1581.854 kb on - strand, within Shewana3_1370at 1582.130 kb on - strand, within Shewana3_1370at 1582.136 kb on + strand, within Shewana3_1370

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,580,143 + Shewana3_1367 0.39 -1.8
1,580,344 - Shewana3_1367 0.80 -2.7
1,580,446 - -0.1
1,580,481 - -0.8
1,580,623 + -2.0
1,580,623 + -1.1
1,580,653 - Shewana3_1368 0.14 +2.0
1,580,881 + Shewana3_1368 0.71 +0.7
1,580,889 - Shewana3_1368 0.73 +1.2
1,581,108 + Shewana3_1369 0.27 -1.1
1,581,116 - Shewana3_1369 0.29 +0.9
1,581,439 + +0.4
1,581,683 + Shewana3_1370 0.16 -1.7
1,581,854 - Shewana3_1370 0.25 +0.1
1,582,130 - Shewana3_1370 0.38 -1.5
1,582,136 + Shewana3_1370 0.38 +0.2

Or see this region's nucleotide sequence