Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1120

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispD and ispF are separated by 51 nucleotidesispF and Shewana3_1120 are separated by 29 nucleotidesShewana3_1120 and surE overlap by 4 nucleotidessurE and Shewana3_1122 overlap by 4 nucleotides Shewana3_1118: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 1,317,457 to 1,318,206 ispD Shewana3_1119: ispF - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (RefSeq), at 1,318,258 to 1,318,737 ispF Shewana3_1120: Shewana3_1120 - tRNA pseudouridine synthase D, TruD (RefSeq), at 1,318,767 to 1,319,894 _1120 Shewana3_1121: surE - stationary phase survival protein SurE (RefSeq), at 1,319,891 to 1,320,640 surE Shewana3_1122: Shewana3_1122 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 1,320,637 to 1,321,272 _1122 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1318.727 kb on + strandat 1318.941 kb on - strand, within Shewana3_1120at 1319.026 kb on - strand, within Shewana3_1120at 1319.066 kb on + strand, within Shewana3_1120at 1319.074 kb on - strand, within Shewana3_1120at 1319.146 kb on + strand, within Shewana3_1120at 1319.262 kb on + strand, within Shewana3_1120at 1319.331 kb on + strand, within Shewana3_1120at 1319.333 kb on + strand, within Shewana3_1120at 1319.350 kb on + strand, within Shewana3_1120at 1319.584 kb on + strand, within Shewana3_1120at 1319.876 kb on + strandat 1319.886 kb on + strandat 1319.978 kb on + strand, within surEat 1320.132 kb on - strand, within surEat 1320.232 kb on + strand, within surEat 1320.397 kb on + strand, within surEat 1320.433 kb on + strand, within surEat 1320.441 kb on - strand, within surEat 1320.578 kb on + strandat 1320.728 kb on + strand, within Shewana3_1122

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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1,318,727 + +0.4
1,318,941 - Shewana3_1120 0.15 -0.5
1,319,026 - Shewana3_1120 0.23 -2.2
1,319,066 + Shewana3_1120 0.27 -2.7
1,319,074 - Shewana3_1120 0.27 -3.0
1,319,146 + Shewana3_1120 0.34 -1.8
1,319,262 + Shewana3_1120 0.44 -0.1
1,319,331 + Shewana3_1120 0.50 -2.3
1,319,333 + Shewana3_1120 0.50 -0.8
1,319,350 + Shewana3_1120 0.52 -0.9
1,319,584 + Shewana3_1120 0.72 -3.4
1,319,876 + -1.0
1,319,886 + -1.7
1,319,978 + surE Shewana3_1121 0.12 -2.4
1,320,132 - surE Shewana3_1121 0.32 -2.9
1,320,232 + surE Shewana3_1121 0.45 -1.9
1,320,397 + surE Shewana3_1121 0.67 -0.5
1,320,433 + surE Shewana3_1121 0.72 -3.4
1,320,441 - surE Shewana3_1121 0.73 -3.8
1,320,578 + -3.8
1,320,728 + Shewana3_1122 0.14 -1.4

Or see this region's nucleotide sequence