Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0750 and Shewana3_0751 are separated by 266 nucleotides Shewana3_0751 and Shewana3_0752 are separated by 144 nucleotides
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Shewana3_0751: Shewana3_0751 - hypothetical protein (RefSeq), at 871,512 to 871,982
_0751
Shewana3_0752: Shewana3_0752 - putative manganese transporter (RefSeq), at 872,127 to 873,413
_0752
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1 at 870.700 kb on + strand, within Shewana3_0750 at 870.703 kb on - strand, within Shewana3_0750 at 870.782 kb on - strand, within Shewana3_0750 at 870.872 kb on + strand, within Shewana3_0750 at 870.880 kb on - strand, within Shewana3_0750 at 870.922 kb on + strand, within Shewana3_0750 at 870.978 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.058 kb on + strand, within Shewana3_0750 at 871.226 kb on - strand at 871.252 kb on + strand at 871.254 kb on - strand at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.632 kb on - strand, within Shewana3_0751 at 871.826 kb on + strand, within Shewana3_0751 at 871.835 kb on - strand, within Shewana3_0751 at 871.869 kb on - strand, within Shewana3_0751 at 872.076 kb on + strand at 872.084 kb on - strand at 872.084 kb on - strand at 872.241 kb on - strand at 872.325 kb on - strand, within Shewana3_0752 at 872.640 kb on - strand, within Shewana3_0752 at 872.678 kb on - strand, within Shewana3_0752 at 872.915 kb on - strand, within Shewana3_0752
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 870,700 + Shewana3_0750 0.68 -0.0 870,703 - Shewana3_0750 0.68 +1.2 870,782 - Shewana3_0750 0.73 -0.4 870,872 + Shewana3_0750 0.78 -0.7 870,880 - Shewana3_0750 0.78 -2.3 870,922 + Shewana3_0750 0.81 -0.2 870,978 + Shewana3_0750 0.84 -2.0 871,058 + Shewana3_0750 0.89 -1.3 871,058 + Shewana3_0750 0.89 +0.8 871,226 - -1.6 871,252 + -0.8 871,254 - -2.6 871,632 - Shewana3_0751 0.25 -2.0 871,632 - Shewana3_0751 0.25 +0.3 871,632 - Shewana3_0751 0.25 -0.1 871,826 + Shewana3_0751 0.67 +0.2 871,835 - Shewana3_0751 0.69 +0.3 871,869 - Shewana3_0751 0.76 -0.0 872,076 + +1.0 872,084 - -1.7 872,084 - +0.3 872,241 - +0.3 872,325 - Shewana3_0752 0.15 +0.5 872,640 - Shewana3_0752 0.40 -0.2 872,678 - Shewana3_0752 0.43 +0.1 872,915 - Shewana3_0752 0.61 +1.1
Or see this region's nucleotide sequence