Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0456 and Shewana3_0457 are separated by 107 nucleotides Shewana3_0457 and Shewana3_0458 are separated by 493 nucleotides Shewana3_0458 and Shewana3_0459 are separated by 300 nucleotides
Shewana3_0456: Shewana3_0456 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 530,394 to 532,427
_0456
Shewana3_0457: Shewana3_0457 - response regulator receiver protein (RefSeq), at 532,535 to 533,491
_0457
Shewana3_0458: Shewana3_0458 - hypothetical protein (RefSeq), at 533,985 to 534,119
_0458
Shewana3_0459: Shewana3_0459 - protein of unknown function DUF853, NPT hydrolase putative (RefSeq), at 534,420 to 535,913
_0459
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.728 kb on - strand, within Shewana3_0456 at 531.889 kb on - strand, within Shewana3_0456 at 531.907 kb on - strand, within Shewana3_0456 at 532.048 kb on + strand, within Shewana3_0456 at 532.072 kb on + strand, within Shewana3_0456 at 532.102 kb on - strand, within Shewana3_0456 at 532.135 kb on - strand, within Shewana3_0456 at 532.209 kb on + strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.217 kb on - strand, within Shewana3_0456 at 532.225 kb on + strand at 532.363 kb on + strand at 532.363 kb on + strand at 532.371 kb on - strand at 532.375 kb on + strand at 532.442 kb on + strand at 532.447 kb on + strand at 532.450 kb on - strand at 532.450 kb on - strand at 532.467 kb on + strand at 532.474 kb on + strand at 532.519 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.532 kb on + strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.540 kb on - strand at 532.580 kb on - strand at 532.670 kb on + strand, within Shewana3_0457 at 532.787 kb on + strand, within Shewana3_0457 at 532.903 kb on - strand, within Shewana3_0457 at 532.903 kb on - strand, within Shewana3_0457 at 532.907 kb on + strand, within Shewana3_0457 at 532.920 kb on + strand, within Shewana3_0457 at 532.928 kb on - strand, within Shewana3_0457 at 532.962 kb on - strand, within Shewana3_0457 at 533.209 kb on - strand, within Shewana3_0457 at 533.228 kb on + strand, within Shewana3_0457 at 533.431 kb on - strand at 533.446 kb on + strand at 533.455 kb on - strand at 533.524 kb on - strand at 533.664 kb on - strand at 534.175 kb on + strand at 534.287 kb on - strand at 534.320 kb on - strand at 534.404 kb on + strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.412 kb on - strand at 534.416 kb on + strand at 534.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 531,728 - Shewana3_0456 0.66 +0.6 531,889 - Shewana3_0456 0.74 -2.2 531,907 - Shewana3_0456 0.74 -1.5 532,048 + Shewana3_0456 0.81 +0.4 532,072 + Shewana3_0456 0.82 +0.8 532,102 - Shewana3_0456 0.84 -1.5 532,135 - Shewana3_0456 0.86 +0.7 532,209 + Shewana3_0456 0.89 -1.6 532,217 - Shewana3_0456 0.90 +0.7 532,217 - Shewana3_0456 0.90 -1.1 532,217 - Shewana3_0456 0.90 +0.7 532,217 - Shewana3_0456 0.90 +0.2 532,225 + +0.1 532,363 + -1.9 532,363 + -0.8 532,371 - -1.4 532,375 + +0.0 532,442 + +0.3 532,447 + -1.9 532,450 - -1.6 532,450 - +0.4 532,467 + -1.8 532,474 + -2.6 532,519 + +0.9 532,532 + -2.0 532,532 + -0.2 532,532 + +0.5 532,532 + +0.2 532,532 + +0.6 532,532 + +0.2 532,540 - +0.0 532,540 - +0.2 532,540 - -0.0 532,540 - -0.9 532,580 - -0.6 532,670 + Shewana3_0457 0.14 -2.2 532,787 + Shewana3_0457 0.26 -2.5 532,903 - Shewana3_0457 0.38 +0.1 532,903 - Shewana3_0457 0.38 +0.1 532,907 + Shewana3_0457 0.39 -0.3 532,920 + Shewana3_0457 0.40 -0.8 532,928 - Shewana3_0457 0.41 -2.8 532,962 - Shewana3_0457 0.45 +0.0 533,209 - Shewana3_0457 0.70 -1.0 533,228 + Shewana3_0457 0.72 -1.4 533,431 - -0.6 533,446 + +0.6 533,455 - -2.0 533,524 - +0.1 533,664 - +0.2 534,175 + +1.8 534,287 - +0.3 534,320 - +0.0 534,404 + +0.3 534,412 - -0.1 534,412 - -2.1 534,412 - +0.7 534,416 + -3.0 534,490 + -0.4
Or see this region's nucleotide sequence