Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0422

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0421 and Shewana3_0422 are separated by 604 nucleotidesShewana3_0422 and Shewana3_0423 are separated by 276 nucleotides Shewana3_0421: Shewana3_0421 - methylation site containing protein (RefSeq), at 480,325 to 480,753 _0421 Shewana3_0422: Shewana3_0422 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (RefSeq), at 481,358 to 482,239 _0422 Shewana3_0423: Shewana3_0423 - N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq), at 482,516 to 483,061 _0423 Position (kb) 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 480.386 kb on + strand, within Shewana3_0421at 480.394 kb on + strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.394 kb on - strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.401 kb on + strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.409 kb on - strand, within Shewana3_0421at 480.427 kb on + strand, within Shewana3_0421at 480.441 kb on - strand, within Shewana3_0421at 480.443 kb on + strand, within Shewana3_0421at 480.449 kb on - strand, within Shewana3_0421at 480.450 kb on - strand, within Shewana3_0421at 480.463 kb on + strand, within Shewana3_0421at 480.471 kb on - strand, within Shewana3_0421at 480.540 kb on + strand, within Shewana3_0421at 480.550 kb on + strand, within Shewana3_0421at 480.558 kb on - strand, within Shewana3_0421at 480.560 kb on + strand, within Shewana3_0421at 480.594 kb on + strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.661 kb on - strand, within Shewana3_0421at 480.711 kb on + strandat 480.712 kb on + strandat 480.718 kb on + strandat 480.719 kb on - strandat 480.719 kb on - strandat 480.721 kb on - strandat 480.721 kb on - strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.760 kb on + strandat 480.768 kb on - strandat 480.768 kb on - strandat 480.768 kb on - strandat 480.770 kb on - strandat 480.793 kb on + strandat 480.806 kb on - strandat 480.906 kb on - strandat 480.929 kb on - strandat 481.060 kb on - strandat 481.081 kb on + strandat 481.089 kb on - strandat 481.114 kb on + strandat 481.282 kb on - strandat 481.314 kb on - strandat 482.438 kb on + strandat 482.474 kb on - strandat 482.518 kb on - strandat 482.539 kb on - strandat 482.624 kb on - strand, within Shewana3_0423at 482.637 kb on + strand, within Shewana3_0423at 482.637 kb on + strand, within Shewana3_0423at 482.647 kb on + strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.655 kb on - strand, within Shewana3_0423at 482.718 kb on + strand, within Shewana3_0423at 482.762 kb on + strand, within Shewana3_0423at 482.812 kb on - strand, within Shewana3_0423at 482.951 kb on - strand, within Shewana3_0423at 482.963 kb on - strand, within Shewana3_0423at 482.990 kb on - strand, within Shewana3_0423at 483.108 kb on + strandat 483.108 kb on + strandat 483.116 kb on - strandat 483.116 kb on - strandat 483.129 kb on + strandat 483.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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480,386 + Shewana3_0421 0.14 +0.6
480,394 + Shewana3_0421 0.16 -2.1
480,394 - Shewana3_0421 0.16 +1.0
480,394 - Shewana3_0421 0.16 -0.9
480,394 - Shewana3_0421 0.16 -0.4
480,394 - Shewana3_0421 0.16 -0.0
480,394 - Shewana3_0421 0.16 -1.6
480,394 - Shewana3_0421 0.16 +0.7
480,401 + Shewana3_0421 0.18 +1.0
480,401 + Shewana3_0421 0.18 -3.5
480,401 + Shewana3_0421 0.18 -1.2
480,409 - Shewana3_0421 0.20 -0.7
480,409 - Shewana3_0421 0.20 +0.5
480,409 - Shewana3_0421 0.20 -1.0
480,427 + Shewana3_0421 0.24 +0.3
480,441 - Shewana3_0421 0.27 +0.3
480,443 + Shewana3_0421 0.28 +0.1
480,449 - Shewana3_0421 0.29 -0.5
480,450 - Shewana3_0421 0.29 +0.6
480,463 + Shewana3_0421 0.32 -0.3
480,471 - Shewana3_0421 0.34 -1.9
480,540 + Shewana3_0421 0.50 +0.6
480,550 + Shewana3_0421 0.52 -0.5
480,558 - Shewana3_0421 0.54 +1.1
480,560 + Shewana3_0421 0.55 +0.7
480,594 + Shewana3_0421 0.63 +1.2
480,661 - Shewana3_0421 0.78 -1.8
480,661 - Shewana3_0421 0.78 -1.7
480,661 - Shewana3_0421 0.78 +0.2
480,661 - Shewana3_0421 0.78 +2.1
480,711 + +0.3
480,712 + +0.8
480,718 + +0.7
480,719 - -1.1
480,719 - -2.1
480,721 - +1.0
480,721 - +0.3
480,760 + -2.1
480,760 + +0.4
480,760 + -1.7
480,760 + +0.6
480,760 + +0.8
480,760 + +1.0
480,760 + +0.4
480,768 - +0.8
480,768 - +0.7
480,768 - +0.3
480,770 - +0.1
480,793 + +0.9
480,806 - +1.1
480,906 - -1.1
480,929 - +1.2
481,060 - +0.0
481,081 + -0.1
481,089 - +2.8
481,114 + +0.3
481,282 - +1.1
481,314 - +0.7
482,438 + -1.8
482,474 - +0.7
482,518 - +0.8
482,539 - -1.9
482,624 - Shewana3_0423 0.20 -1.4
482,637 + Shewana3_0423 0.22 -1.1
482,637 + Shewana3_0423 0.22 +0.5
482,647 + Shewana3_0423 0.24 -2.3
482,655 - Shewana3_0423 0.25 +0.3
482,655 - Shewana3_0423 0.25 -1.4
482,655 - Shewana3_0423 0.25 +0.3
482,655 - Shewana3_0423 0.25 -2.3
482,655 - Shewana3_0423 0.25 +0.3
482,655 - Shewana3_0423 0.25 +0.3
482,655 - Shewana3_0423 0.25 -1.9
482,718 + Shewana3_0423 0.37 -1.2
482,762 + Shewana3_0423 0.45 -2.0
482,812 - Shewana3_0423 0.54 -2.2
482,951 - Shewana3_0423 0.80 -1.3
482,963 - Shewana3_0423 0.82 -1.8
482,990 - Shewana3_0423 0.87 -1.0
483,108 + -0.4
483,108 + +0.0
483,116 - +0.3
483,116 - +0.1
483,129 + -1.7
483,235 + +0.3

Or see this region's nucleotide sequence