Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0365 and Shewana3_0366 are separated by 162 nucleotides Shewana3_0366 and Shewana3_0367 are separated by 236 nucleotides Shewana3_0367 and Shewana3_0368 overlap by 4 nucleotides Shewana3_0368 and Shewana3_0369 are separated by 59 nucleotides Shewana3_0369 and Shewana3_0370 are separated by 94 nucleotides
Shewana3_0365: Shewana3_0365 - hypothetical protein (RefSeq), at 401,643 to 403,118
_0365
Shewana3_0366: Shewana3_0366 - hypothetical protein (RefSeq), at 403,281 to 403,808
_0366
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573
_0368
Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965
_0369
Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314
_0370
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 403.089 kb on + strand at 403.359 kb on - strand, within Shewana3_0366 at 403.394 kb on + strand, within Shewana3_0366 at 403.541 kb on + strand, within Shewana3_0366 at 403.572 kb on - strand, within Shewana3_0366 at 403.683 kb on + strand, within Shewana3_0366 at 403.717 kb on + strand, within Shewana3_0366 at 403.842 kb on - strand at 403.875 kb on + strand at 403.877 kb on - strand at 404.107 kb on - strand at 404.108 kb on - strand at 404.249 kb on - strand, within Shewana3_0367 at 404.385 kb on - strand, within Shewana3_0367 at 404.714 kb on - strand, within Shewana3_0367 at 404.958 kb on + strand, within Shewana3_0367 at 405.317 kb on + strand, within Shewana3_0368 at 405.339 kb on - strand, within Shewana3_0368 at 405.509 kb on + strand, within Shewana3_0368 at 405.638 kb on + strand at 405.818 kb on - strand, within Shewana3_0369 at 405.848 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.917 kb on + strand, within Shewana3_0369 at 405.927 kb on + strand, within Shewana3_0369 at 405.935 kb on - strand at 405.935 kb on - strand at 406.187 kb on - strand, within Shewana3_0370
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 403,089 + -2.2 403,359 - Shewana3_0366 0.15 -1.8 403,394 + Shewana3_0366 0.21 -0.5 403,541 + Shewana3_0366 0.49 +0.6 403,572 - Shewana3_0366 0.55 +0.5 403,683 + Shewana3_0366 0.76 -1.1 403,717 + Shewana3_0366 0.83 -2.8 403,842 - +0.5 403,875 + +0.2 403,877 - +1.0 404,107 - +0.6 404,108 - +0.5 404,249 - Shewana3_0367 0.17 +0.8 404,385 - Shewana3_0367 0.29 +1.0 404,714 - Shewana3_0367 0.57 -1.1 404,958 + Shewana3_0367 0.78 +0.5 405,317 + Shewana3_0368 0.30 +1.2 405,339 - Shewana3_0368 0.36 -1.8 405,509 + Shewana3_0368 0.82 +0.7 405,638 + -0.5 405,818 - Shewana3_0369 0.56 +0.1 405,848 - Shewana3_0369 0.65 +1.5 405,895 - Shewana3_0369 0.79 +0.5 405,895 - Shewana3_0369 0.79 +0.6 405,917 + Shewana3_0369 0.85 -2.1 405,927 + Shewana3_0369 0.88 +0.7 405,935 - +0.1 405,935 - +0.1 406,187 - Shewana3_0370 0.50 +0.2
Or see this region's nucleotide sequence