Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0363 and Shewana3_0364 are separated by 102 nucleotides Shewana3_0364 and Shewana3_0365 are separated by 92 nucleotides Shewana3_0365 and Shewana3_0366 are separated by 162 nucleotides Shewana3_0366 and Shewana3_0367 are separated by 236 nucleotides
Shewana3_0363: Shewana3_0363 - hypothetical protein (RefSeq), at 400,123 to 400,650
_0363
Shewana3_0364: Shewana3_0364 - phosphatidylglycerophosphatase (RefSeq), at 400,753 to 401,550
_0364
Shewana3_0365: Shewana3_0365 - hypothetical protein (RefSeq), at 401,643 to 403,118
_0365
Shewana3_0366: Shewana3_0366 - hypothetical protein (RefSeq), at 403,281 to 403,808
_0366
Shewana3_0367: Shewana3_0367 - hypothetical protein (RefSeq), at 404,045 to 405,211
_0367
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 400.731 kb on - strand at 400.855 kb on - strand, within Shewana3_0364 at 400.971 kb on + strand, within Shewana3_0364 at 400.971 kb on + strand, within Shewana3_0364 at 401.116 kb on - strand, within Shewana3_0364 at 401.123 kb on + strand, within Shewana3_0364 at 401.354 kb on + strand, within Shewana3_0364 at 401.394 kb on - strand, within Shewana3_0364 at 401.520 kb on - strand at 401.521 kb on + strand at 401.553 kb on + strand at 401.566 kb on + strand at 401.643 kb on + strand at 401.643 kb on + strand at 401.643 kb on + strand at 401.645 kb on + strand at 401.663 kb on - strand at 401.721 kb on + strand at 401.760 kb on - strand at 401.760 kb on - strand at 401.928 kb on + strand, within Shewana3_0365 at 401.958 kb on + strand, within Shewana3_0365 at 401.966 kb on - strand, within Shewana3_0365 at 401.966 kb on - strand, within Shewana3_0365 at 401.978 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.090 kb on - strand, within Shewana3_0365 at 402.107 kb on + strand, within Shewana3_0365 at 402.220 kb on + strand, within Shewana3_0365 at 402.228 kb on - strand, within Shewana3_0365 at 402.316 kb on - strand, within Shewana3_0365 at 402.377 kb on + strand, within Shewana3_0365 at 402.598 kb on + strand, within Shewana3_0365 at 402.777 kb on + strand, within Shewana3_0365 at 402.925 kb on + strand, within Shewana3_0365 at 402.933 kb on + strand, within Shewana3_0365 at 402.979 kb on + strand at 403.089 kb on + strand at 403.359 kb on - strand, within Shewana3_0366 at 403.394 kb on + strand, within Shewana3_0366 at 403.541 kb on + strand, within Shewana3_0366 at 403.572 kb on - strand, within Shewana3_0366 at 403.683 kb on + strand, within Shewana3_0366 at 403.717 kb on + strand, within Shewana3_0366 at 403.842 kb on - strand at 403.875 kb on + strand at 403.877 kb on - strand at 404.107 kb on - strand at 404.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 400,731 - -1.8 400,855 - Shewana3_0364 0.13 -1.4 400,971 + Shewana3_0364 0.27 -1.4 400,971 + Shewana3_0364 0.27 +0.5 401,116 - Shewana3_0364 0.45 -0.1 401,123 + Shewana3_0364 0.46 +0.5 401,354 + Shewana3_0364 0.75 +0.5 401,394 - Shewana3_0364 0.80 -0.4 401,520 - -2.0 401,521 + -1.8 401,553 + +0.1 401,566 + +0.5 401,643 + +1.0 401,643 + +0.6 401,643 + +0.6 401,645 + -1.6 401,663 - +0.0 401,721 + +1.4 401,760 - -0.5 401,760 - -2.6 401,928 + Shewana3_0365 0.19 -0.8 401,958 + Shewana3_0365 0.21 +0.2 401,966 - Shewana3_0365 0.22 +1.0 401,966 - Shewana3_0365 0.22 -1.3 401,978 - Shewana3_0365 0.23 +0.8 402,090 - Shewana3_0365 0.30 +1.4 402,090 - Shewana3_0365 0.30 +0.7 402,090 - Shewana3_0365 0.30 -1.3 402,107 + Shewana3_0365 0.31 -1.1 402,220 + Shewana3_0365 0.39 -0.2 402,228 - Shewana3_0365 0.40 -0.8 402,316 - Shewana3_0365 0.46 +0.3 402,377 + Shewana3_0365 0.50 +0.8 402,598 + Shewana3_0365 0.65 +0.9 402,777 + Shewana3_0365 0.77 +0.7 402,925 + Shewana3_0365 0.87 -0.6 402,933 + Shewana3_0365 0.87 +0.9 402,979 + +0.6 403,089 + -2.2 403,359 - Shewana3_0366 0.15 -1.8 403,394 + Shewana3_0366 0.21 -0.5 403,541 + Shewana3_0366 0.49 +0.6 403,572 - Shewana3_0366 0.55 +0.5 403,683 + Shewana3_0366 0.76 -1.1 403,717 + Shewana3_0366 0.83 -2.8 403,842 - +0.5 403,875 + +0.2 403,877 - +1.0 404,107 - +0.6 404,108 - +0.5
Or see this region's nucleotide sequence