Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0333 and Shewana3_0334 overlap by 4 nucleotides Shewana3_0334 and Shewana3_0335 overlap by 4 nucleotides Shewana3_0335 and Shewana3_0336 overlap by 4 nucleotides
Shewana3_0333: Shewana3_0333 - hypothetical protein (RefSeq), at 369,001 to 369,843
_0333
Shewana3_0334: Shewana3_0334 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 369,840 to 370,274
_0334
Shewana3_0335: Shewana3_0335 - histidine ammonia-lyase (RefSeq), at 370,271 to 371,836
_0335
Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653
_0336
Position (kb) 370
371
372 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.288 kb on - strand, within Shewana3_0333 at 369.381 kb on - strand, within Shewana3_0333 at 369.502 kb on - strand, within Shewana3_0333 at 369.561 kb on - strand, within Shewana3_0333 at 369.573 kb on + strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.693 kb on - strand, within Shewana3_0333 at 369.752 kb on - strand, within Shewana3_0333 at 369.757 kb on + strand, within Shewana3_0333 at 369.765 kb on + strand at 369.765 kb on + strand at 369.951 kb on + strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.954 kb on - strand, within Shewana3_0334 at 369.960 kb on - strand, within Shewana3_0334 at 370.195 kb on - strand, within Shewana3_0334 at 370.250 kb on + strand at 370.324 kb on + strand at 370.439 kb on + strand, within Shewana3_0335 at 370.479 kb on - strand, within Shewana3_0335 at 370.498 kb on + strand, within Shewana3_0335 at 370.530 kb on + strand, within Shewana3_0335 at 370.597 kb on - strand, within Shewana3_0335 at 370.601 kb on - strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.612 kb on + strand, within Shewana3_0335 at 370.759 kb on + strand, within Shewana3_0335 at 370.869 kb on - strand, within Shewana3_0335 at 371.002 kb on + strand, within Shewana3_0335 at 371.015 kb on + strand, within Shewana3_0335 at 371.427 kb on + strand, within Shewana3_0335 at 371.447 kb on + strand, within Shewana3_0335 at 371.547 kb on - strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.607 kb on + strand, within Shewana3_0335 at 371.761 kb on + strand at 371.846 kb on + strand at 371.849 kb on - strand at 371.946 kb on + strand at 372.009 kb on - strand at 372.282 kb on + strand, within Shewana3_0336 at 372.290 kb on - strand, within Shewana3_0336 at 372.314 kb on - strand, within Shewana3_0336 at 372.431 kb on + strand, within Shewana3_0336 at 372.441 kb on + strand, within Shewana3_0336 at 372.543 kb on - strand, within Shewana3_0336
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 369,288 - Shewana3_0333 0.34 +0.4 369,381 - Shewana3_0333 0.45 +0.7 369,502 - Shewana3_0333 0.59 +0.6 369,561 - Shewana3_0333 0.66 +0.4 369,573 + Shewana3_0333 0.68 +1.3 369,693 - Shewana3_0333 0.82 +1.5 369,693 - Shewana3_0333 0.82 +0.3 369,752 - Shewana3_0333 0.89 +0.2 369,757 + Shewana3_0333 0.90 +0.1 369,765 + +0.9 369,765 + +0.0 369,951 + Shewana3_0334 0.26 +1.9 369,954 - Shewana3_0334 0.26 -2.3 369,954 - Shewana3_0334 0.26 +0.5 369,960 - Shewana3_0334 0.28 +0.1 370,195 - Shewana3_0334 0.82 +0.7 370,250 + +0.1 370,324 + -2.6 370,439 + Shewana3_0335 0.11 +1.2 370,479 - Shewana3_0335 0.13 -1.9 370,498 + Shewana3_0335 0.14 -2.3 370,530 + Shewana3_0335 0.17 +0.7 370,597 - Shewana3_0335 0.21 +0.5 370,601 - Shewana3_0335 0.21 +0.2 370,612 + Shewana3_0335 0.22 +0.6 370,612 + Shewana3_0335 0.22 +0.9 370,612 + Shewana3_0335 0.22 +0.3 370,612 + Shewana3_0335 0.22 -1.2 370,759 + Shewana3_0335 0.31 -2.0 370,869 - Shewana3_0335 0.38 +0.3 371,002 + Shewana3_0335 0.47 -0.2 371,015 + Shewana3_0335 0.48 -0.2 371,427 + Shewana3_0335 0.74 +0.4 371,447 + Shewana3_0335 0.75 +0.3 371,547 - Shewana3_0335 0.81 +0.5 371,607 + Shewana3_0335 0.85 +0.4 371,607 + Shewana3_0335 0.85 -1.3 371,761 + +0.4 371,846 + +0.6 371,849 - -0.9 371,946 + +0.4 372,009 - +0.4 372,282 + Shewana3_0336 0.25 -1.1 372,290 - Shewana3_0336 0.25 -1.0 372,314 - Shewana3_0336 0.26 +0.4 372,431 + Shewana3_0336 0.33 +0.8 372,441 + Shewana3_0336 0.33 +0.7 372,543 - Shewana3_0336 0.39 -1.2
Or see this region's nucleotide sequence