Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0259 and Shewana3_0260 are separated by 121 nucleotides Shewana3_0260 and Shewana3_0261 are separated by 274 nucleotides Shewana3_0261 and Shewana3_0262 are separated by 149 nucleotides Shewana3_0262 and Shewana3_0263 are separated by 116 nucleotides
Shewana3_0259: Shewana3_0259 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 290,484 to 291,530
_0259
Shewana3_0260: Shewana3_0260 - hypothetical protein (RefSeq), at 291,652 to 292,185
_0260
Shewana3_0261: Shewana3_0261 - iron-containing alcohol dehydrogenase (RefSeq), at 292,460 to 293,617
_0261
Shewana3_0262: Shewana3_0262 - TetR family transcriptional regulator (RefSeq), at 293,767 to 294,363
_0262
Shewana3_0263: Shewana3_0263 - hypothetical protein (RefSeq), at 294,480 to 294,791
_0263
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.557 kb on + strand at 291.557 kb on + strand at 291.606 kb on + strand at 291.606 kb on + strand at 291.778 kb on - strand, within Shewana3_0260 at 291.801 kb on + strand, within Shewana3_0260 at 291.822 kb on - strand, within Shewana3_0260 at 291.926 kb on + strand, within Shewana3_0260 at 292.082 kb on - strand, within Shewana3_0260 at 292.173 kb on - strand at 292.178 kb on - strand at 292.281 kb on - strand at 292.381 kb on - strand at 292.414 kb on - strand at 292.540 kb on + strand at 292.570 kb on - strand at 292.687 kb on + strand, within Shewana3_0261 at 292.687 kb on + strand, within Shewana3_0261 at 292.740 kb on - strand, within Shewana3_0261 at 292.766 kb on + strand, within Shewana3_0261 at 292.786 kb on - strand, within Shewana3_0261 at 292.807 kb on + strand, within Shewana3_0261 at 292.808 kb on - strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.835 kb on + strand, within Shewana3_0261 at 292.843 kb on - strand, within Shewana3_0261 at 292.849 kb on - strand, within Shewana3_0261 at 292.907 kb on + strand, within Shewana3_0261 at 292.922 kb on + strand, within Shewana3_0261 at 292.977 kb on + strand, within Shewana3_0261 at 292.985 kb on - strand, within Shewana3_0261 at 292.990 kb on - strand, within Shewana3_0261 at 292.993 kb on - strand, within Shewana3_0261 at 293.084 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.210 kb on + strand, within Shewana3_0261 at 293.408 kb on + strand, within Shewana3_0261 at 293.539 kb on + strand at 293.539 kb on + strand at 293.628 kb on + strand at 293.805 kb on + strand at 293.805 kb on + strand at 293.813 kb on - strand at 293.972 kb on - strand, within Shewana3_0262 at 294.005 kb on + strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.070 kb on - strand, within Shewana3_0262 at 294.130 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.169 kb on - strand, within Shewana3_0262 at 294.191 kb on - strand, within Shewana3_0262 at 294.279 kb on - strand, within Shewana3_0262
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 291,557 + -2.8 291,557 + +0.6 291,606 + +0.5 291,606 + -1.3 291,778 - Shewana3_0260 0.24 -0.1 291,801 + Shewana3_0260 0.28 +0.7 291,822 - Shewana3_0260 0.32 +1.3 291,926 + Shewana3_0260 0.51 -2.5 292,082 - Shewana3_0260 0.81 -1.0 292,173 - +1.0 292,178 - -2.6 292,281 - +0.5 292,381 - -1.0 292,414 - -1.6 292,540 + +0.5 292,570 - +0.6 292,687 + Shewana3_0261 0.20 +0.3 292,687 + Shewana3_0261 0.20 -1.9 292,740 - Shewana3_0261 0.24 +0.7 292,766 + Shewana3_0261 0.26 +0.1 292,786 - Shewana3_0261 0.28 +0.5 292,807 + Shewana3_0261 0.30 -2.5 292,808 - Shewana3_0261 0.30 -0.1 292,835 + Shewana3_0261 0.32 +1.1 292,835 + Shewana3_0261 0.32 +0.6 292,835 + Shewana3_0261 0.32 -2.2 292,835 + Shewana3_0261 0.32 +1.5 292,843 - Shewana3_0261 0.33 +0.2 292,849 - Shewana3_0261 0.34 -1.4 292,907 + Shewana3_0261 0.39 +0.8 292,922 + Shewana3_0261 0.40 -3.1 292,977 + Shewana3_0261 0.45 +0.4 292,985 - Shewana3_0261 0.45 +0.2 292,990 - Shewana3_0261 0.46 +0.2 292,993 - Shewana3_0261 0.46 +0.7 293,084 + Shewana3_0261 0.54 -1.7 293,210 + Shewana3_0261 0.65 +0.2 293,210 + Shewana3_0261 0.65 +0.3 293,408 + Shewana3_0261 0.82 +1.7 293,539 + +0.8 293,539 + +1.1 293,628 + -0.9 293,805 + -1.5 293,805 + -1.4 293,813 - +1.8 293,972 - Shewana3_0262 0.34 +0.2 294,005 + Shewana3_0262 0.40 +0.4 294,070 - Shewana3_0262 0.51 +0.0 294,070 - Shewana3_0262 0.51 +0.9 294,130 - Shewana3_0262 0.61 +1.6 294,169 - Shewana3_0262 0.67 +0.4 294,169 - Shewana3_0262 0.67 +0.2 294,191 - Shewana3_0262 0.71 +0.3 294,279 - Shewana3_0262 0.86 +0.2
Or see this region's nucleotide sequence